RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 CLCN6P51797 869 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 STX17P56962 302 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 KRT83P78385 493 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 TLE3Q04726 772 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 ZNF284Q2VY69 593 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 OTUD1Q5VV17 481 aaPredicted RBP13.91□□□□□ -0.18
SS18-204ENST00000539244 CDCP2Q5VXM1 449 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 GJB7Q6PEY0 223 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 FAM183BPQ6ZVS7 135 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 ABI3BPQ7Z7G0 1075 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 C14orf80Q86SX3 495 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 SETD3Q86TU7 594 aaPredicted RBP13.91□□□□□ -0.18
SS18-204ENST00000539244 ZNF683Q8IZ20 524 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 FAM174AQ8TBP5 190 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 CCDC114Q96M63 670 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 NOX5Q96PH1 765 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 C2orf49Q9BVC5 232 aaPredicted RBP13.91□□□□□ -0.18
SS18-204ENST00000539244 MUC3BQ9H195 1237 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 GPR27Q9NS67 375 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 ARHGEF38Q9NXL2 777 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 RRN3Q9NYV6 651 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 COX16Q9P0S2 106 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 APEX2Q9UBZ4 518 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 FARP1Q9Y4F1 1045 aaPredicted RBP13.91□□□□□ -0.18
SS18-204ENST00000539244 TRPM6Q9BX84 2022 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 DOCK4Q8N1I0 1966 aa13.91□□□□□ -0.18
SS18-204ENST00000539244 A0A1W2PQU0 124 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 M0QYT0 321 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 SLC31A1O15431 190 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 LZTS3O60299 673 aaPredicted RBP13.9□□□□□ -0.18
SS18-204ENST00000539244 GRAP2O75791 330 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 PIAS2O75928 621 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 DXOO77932 396 aaKnown RBP13.9□□□□□ -0.18
SS18-204ENST00000539244 FGFR1OPO95684 399 aaKnown RBP13.9□□□□□ -0.18
SS18-204ENST00000539244 PRNPP04156 253 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 AKT2P31751 481 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 GGCXP38435 758 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 CXCR3P49682 368 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 SNX16P57768 344 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 SLC6A3Q01959 620 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 NME3Q13232 169 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 ALFQ53S48 1182 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 HS1BP3Q53T59 392 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 BRMS1LQ5PSV4 323 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 GPR155Q7Z3F1 870 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 SPACA3Q8IXA5 215 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 SLC22A18ASQ8N1D0 253 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 FAM181AQ8N9Y4 354 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 DCAF4L2Q8NA75 395 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 NT5C3BQ969T7 300 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 ARRDC3Q96B67 414 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 PGAP3Q96FM1 320 aaPredicted RBP13.9□□□□□ -0.18
SS18-204ENST00000539244 NPY6RQ99463 290 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 HDAC8Q9BY41 377 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 USP29Q9HBJ7 922 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 TMEM51Q9NW97 253 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 UCKL1Q9NWZ5 548 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 NLGN3Q9NZ94 848 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 VPS51Q9UID3 782 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 MGAQ8IWI9 3026 aa13.9□□□□□ -0.18
SS18-204ENST00000539244 IGLV3-10A0A075B6K4 115 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 GTPBP10A4D1E9 387 aaKnown RBP13.89□□□□□ -0.19
SS18-204ENST00000539244 DRGXA6NNA5 263 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 I6L893 689 aaPredicted RBP13.89□□□□□ -0.19
SS18-204ENST00000539244 KPNA3O00505 521 aaPredicted RBP13.89□□□□□ -0.19
SS18-204ENST00000539244 BNIP3LO60238 219 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 SNAP91O60641 907 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 CNTN5O94779 1100 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 ERBB2P04626 1255 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 GP1BAP07359 652 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 RHOCP08134 193 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 PRLRP16471 622 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 SLC9A1P19634 815 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 DAB2P98082 770 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 PTPN20Q4JDL3 420 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 TMEM259Q4ZIN3 620 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 ACBD5Q5T8D3 534 aaPredicted RBP13.89□□□□□ -0.19
SS18-204ENST00000539244 OR6B2Q6IFH4 312 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 KDM7AQ6ZMT4 941 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 GCNT7Q6ZNI0 430 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 ERN2Q76MJ5 926 aaKnown RBP13.89□□□□□ -0.19
SS18-204ENST00000539244 ZDHHC17Q8IUH5 632 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 PASD1Q8IV76 773 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 ATP11CQ8NB49 1132 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 C1orf131Q8NDD1 294 aaKnown RBP13.89□□□□□ -0.19
SS18-204ENST00000539244 ZNF248Q8NDW4 579 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 OR13H1Q8NG92 308 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 HIC2Q96JB3 615 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 C1orf74Q96LT6 269 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 ZNF578Q96N58 590 aaPredicted RBP13.89□□□□□ -0.19
SS18-204ENST00000539244 CRACR2AQ9BSW2 395 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 SIK2Q9H0K1 926 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 WDCPQ9H6R7 721 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 ANLNQ9NQW6 1124 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 DYRK4Q9NR20 520 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 PIGVQ9NUD9 493 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 ZFR2Q9UPR6 939 aaKnown RBP13.89□□□□□ -0.19
SS18-204ENST00000539244 HS3ST3A1Q9Y663 406 aa13.89□□□□□ -0.19
SS18-204ENST00000539244 LY6G6EA0A0G2JKS1 128 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 K7ERQ8 282 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms