RNA–Protein interactions for RNA: ENST00000536429.1

PRKDC-206, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 659 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-206	ENST00000536429	FNIP1	Q8TF40	1166 aa		13.46	□□□□□ -0.25
PRKDC-206	ENST00000536429	DNASE2B	Q8WZ79	361 aa		13.46	□□□□□ -0.25
PRKDC-206	ENST00000536429	TRIM11	Q96F44	468 aa		13.46	□□□□□ -0.25
PRKDC-206	ENST00000536429	CHP1	Q99653	195 aa		13.46	□□□□□ -0.25
PRKDC-206	ENST00000536429	KLC2	Q9H0B6	622 aa		13.46	□□□□□ -0.25
PRKDC-206	ENST00000536429	BTBD1	Q9H0C5	482 aa		13.46	□□□□□ -0.25
PRKDC-206	ENST00000536429	EVL	Q9UI08	416 aa	Predicted RBP	13.46	□□□□□ -0.25
PRKDC-206	ENST00000536429	PPM1H	Q9ULR3	514 aa		13.46	□□□□□ -0.25
PRKDC-206	ENST00000536429	AP4E1	Q9UPM8	1137 aa		13.46	□□□□□ -0.25
PRKDC-206	ENST00000536429	FCF1	Q9Y324	198 aa	Known RBP	13.46	□□□□□ -0.25
PRKDC-206	ENST00000536429	FAM47DP	A6NHR8	397 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	CDX4	O14627	284 aa	Predicted RBP	13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	SLC30A4	O14863	429 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	RAMP2	O60895	175 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	MFAP3L	O75121	409 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	CFI	P05156	583 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	SERPINH1	P50454	418 aa	Known RBP	13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	GALC	P54803	685 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	TBX2	Q13207	712 aa	Predicted RBP	13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	TRIM14	Q14142	442 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	PUM1	Q14671	1186 aa	Known RBP eCLIP	13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	TXNRD3NB	Q6F5E7	133 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	C22orf39	Q6P5X5	142 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	SLC23A3	Q6PIS1	610 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	SARM1	Q6SZW1	724 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	ZCCHC9	Q8N567	271 aa	Known RBP	13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	OR2I1P	Q8NGU4	316 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	OR8D1	Q8WZ84	308 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	FOXJ1	Q92949	421 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	HMCES	Q96FZ2	354 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	EPAS1	Q99814	870 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	NUP85	Q9BW27	656 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	MIR1-1HG	Q9H1L0	117 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	DHX35	Q9H5Z1	703 aa	Known RBP	13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	SGK2	Q9HBY8	427 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	CAPN10	Q9HC96	672 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	MRPL47	Q9HD33	250 aa	Known RBP	13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	ABHD10	Q9NUJ1	306 aa		13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	EIF2B4	Q9UI10	523 aa	Known RBP	13.45	□□□□□ -0.26
PRKDC-206	ENST00000536429	RALGAPA1	Q6GYQ0	2036 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	NUP205	Q92621	2012 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	NCOR2	Q9Y618	2525 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	TNRC6B	Q9UPQ9	1833 aa	Known RBP	13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	C4orf47	A7E2U8	309 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	WASH4P	A8MWX3	477 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	MCF2L	O15068	1137 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	PRPSAP2	O60256	369 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	FOXD2	O60548	495 aa	Predicted RBP	13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	FSBP	O95073	299 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	ADH1B	P00325	375 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	GOT1	P17174	413 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	ENG	P17813	658 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	C5AR1	P21730	350 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	HOXD12	P35452	270 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	MAPK8	P45983	427 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	CLCN6	P51797	869 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	LIMK1	P53667	647 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	AIF1	P55008	147 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	TPI1	P60174	286 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	POLD3	Q15054	466 aa	Predicted RBP	13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	DUOXA1	Q1HG43	343 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	SMTNL2	Q2TAL5	461 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	KCNT1	Q5JUK3	1230 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	WDR45B	Q5MNZ6	344 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	SYCP2L	Q5T4T6	812 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	ERMARD	Q5T6L9	678 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	NCEH1	Q6PIU2	408 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	DPY19L3	Q6ZPD9	716 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	USP30	Q70CQ3	517 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	C1orf216	Q8TAB5	229 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	PIP4K2C	Q8TBX8	421 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	SNX19	Q92543	992 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	BIRC7	Q96CA5	298 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	OMD	Q99983	421 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	ORAI3	Q9BRQ5	295 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	MAGEH1	Q9H213	219 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	EBF2	Q9HAK2	575 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	ANAPC7	Q9UJX3	599 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	SCML1	Q9UN30	329 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	NCKAP1	Q9Y2A7	1128 aa		13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	13.44	□□□□□ -0.26
PRKDC-206	ENST00000536429	CNOT1	A5YKK6	2376 aa	Known RBP	13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	C10orf142	B7Z368	130 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	RASA4B	C9J798	803 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	TM4SF5	O14894	197 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	RASA4	O43374	803 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	RNF8	O76064	485 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	IGHV4-34	P06331	123 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	SERPINF2	P08697	491 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	DES	P17661	470 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	GK	P32189	559 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	CHRNA3	P32297	505 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	ADPRH	P54922	357 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	BNC1	Q01954	994 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	CNTN1	Q12860	1018 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	SLC18A3	Q16572	532 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	RETSAT	Q6NUM9	610 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	LAYN	Q6UX15	382 aa		13.43	□□□□□ -0.26
PRKDC-206	ENST00000536429	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms