RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 NCBP2-AS2Q69YL0 99 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 RETSATQ6NUM9 610 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 LEKR1Q6ZMV7 388 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 SPOCD1Q6ZMY3 1216 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 ZNF354CQ86Y25 554 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 REXO1L1PQ8IX06 675 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 RCOR2Q8IZ40 523 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 CAMKK1Q8N5S9 505 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 ATP11CQ8NB49 1132 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 PRSS33Q8NF86 280 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 TSTD1Q8NFU3 115 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 EXD1Q8NHP7 514 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 FRS2Q8WU20 508 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 ALG3Q92685 438 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 POLMQ9NP87 494 aaPredicted RBP12.32□□□□□ -0.44
CHD4-203ENST00000535717 PRSS16Q9NQE7 514 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 SUN2Q9UH99 717 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 PYCARDQ9ULZ3 195 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 PACSIN2Q9UNF0 486 aaPredicted RBP12.32□□□□□ -0.44
CHD4-203ENST00000535717 CKAP5Q14008 2032 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 EDDM13A0A1B0GTR0 161 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 CXorf51AA0A1B0GTR3 108 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 J3KR12 359 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 DDX3YO15523 660 aaKnown RBP12.31□□□□□ -0.44
CHD4-203ENST00000535717 ZSCAN12O43309 604 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 MFSD11O43934 449 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 PRAMEF11O60813 436 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 SIN3BO75182 1162 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 SP9P0CG40 484 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 KRT10P13645 584 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 SERPINB6P35237 376 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 SERPINH1P50454 418 aaKnown RBP12.31□□□□□ -0.44
CHD4-203ENST00000535717 TCF15Q12870 199 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 LLGL1Q15334 1064 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 ZNF528Q3MIS6 628 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 ACCSLQ4AC99 568 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 C9orf64Q5T6V5 341 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 HEATR6Q6AI08 1181 aaKnown RBP12.31□□□□□ -0.44
CHD4-203ENST00000535717 SLC9A4Q6AI14 798 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 ANO7Q6IWH7 933 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 ARHGAP36Q6ZRI8 547 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 RASSF3Q86WH2 238 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 RFX6Q8HWS3 928 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 NELL1Q92832 810 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 PTPRN2Q92932 1015 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 HES6Q96HZ4 224 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 RBM41Q96IZ5 413 aaKnown RBP12.31□□□□□ -0.44
CHD4-203ENST00000535717 PRRX2Q99811 253 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 MAK16Q9BXY0 300 aaKnown RBP12.31□□□□□ -0.44
CHD4-203ENST00000535717 SLC6A17Q9H1V8 727 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 PDFQ9HBH1 243 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 VPS13AQ96RL7 3174 aa12.31□□□□□ -0.44
CHD4-203ENST00000535717 NYNRINQ9P2P1 1898 aaKnown RBP12.31□□□□□ -0.44
CHD4-203ENST00000535717 hCG_1818297A0A087WSY0 165 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 TARSL2A2RTX5 802 aaKnown RBP12.3□□□□□ -0.44
CHD4-203ENST00000535717 ZSCAN5CA6NGD5 496 aaPredicted RBP12.3□□□□□ -0.44
CHD4-203ENST00000535717 MIF4GDA9UHW6 222 aaKnown RBP12.3□□□□□ -0.44
CHD4-203ENST00000535717 H0Y858 1186 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 APOL1O14791 398 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 ZNF821O75541 412 aaPredicted RBP12.3□□□□□ -0.44
CHD4-203ENST00000535717 ALDH1A2O94788 518 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 GABRG2P18507 467 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 NDUFV2P19404 249 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 FNTBP49356 437 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 CLCN6P51797 869 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 COPAP53621 1224 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 RWDD2BP57060 319 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 GEMIN4P57678 1058 aaKnown RBP12.3□□□□□ -0.44
CHD4-203ENST00000535717 GBE1Q04446 702 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 ADCY2Q08462 1091 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 SLC10A2Q12908 348 aaPredicted RBP12.3□□□□□ -0.44
CHD4-203ENST00000535717 TFDP3Q5H9I0 405 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 Q6ZVU0 165 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 CCDC50Q8IVM0 306 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 UBL4BQ8N7F7 174 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 PLD5Q8N7P1 536 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 MDGA1Q8NFP4 955 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 OR2T3Q8NH03 318 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.3□□□□□ -0.44
CHD4-203ENST00000535717 HMGB4Q8WW32 186 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 MRGPRX1Q96LB2 322 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 ALS2CR12Q96Q35 445 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 MKRN2Q9H000 416 aaKnown RBP12.3□□□□□ -0.44
CHD4-203ENST00000535717 TNKS2Q9H2K2 1166 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 PRDM16Q9HAZ2 1276 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 TRMT1Q9NXH9 659 aaKnown RBP12.3□□□□□ -0.44
CHD4-203ENST00000535717 EBF1Q9UH73 591 aa12.3□□□□□ -0.44
CHD4-203ENST00000535717 IPO11Q9UI26 975 aaKnown RBP12.3□□□□□ -0.44
CHD4-203ENST00000535717 FCF1Q9Y324 198 aaKnown RBP12.3□□□□□ -0.44
CHD4-203ENST00000535717 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.3□□□□□ -0.44
CHD4-203ENST00000535717 USP27XA6NNY8 438 aa12.29□□□□□ -0.44
CHD4-203ENST00000535717 MAFKO60675 156 aa12.29□□□□□ -0.44
CHD4-203ENST00000535717 TMCC1O94876 653 aa12.29□□□□□ -0.44
CHD4-203ENST00000535717 MAP3K6O95382 1288 aa12.29□□□□□ -0.44
CHD4-203ENST00000535717 PYGMP11217 842 aa12.29□□□□□ -0.44
CHD4-203ENST00000535717 ZFXP17010 805 aaPredicted RBP12.29□□□□□ -0.44
CHD4-203ENST00000535717 DNA2P51530 1060 aa12.29□□□□□ -0.44
CHD4-203ENST00000535717 NRLP54845 237 aa12.29□□□□□ -0.44
CHD4-203ENST00000535717 COPS2P61201 443 aa12.29□□□□□ -0.44
CHD4-203ENST00000535717 DYNLT1P63172 113 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms