RNA–Protein interactions for RNA: ENST00000533643.1

COMMD9-208, Transcript of COMM domain containing 9, humanhuman

TSL 2

Gene COMMD9, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD9-208ENST00000533643 MATN3O15232 486 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 VAV1P15498 845 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 VASPP50552 380 aaPredicted RBP12.15□□□□□ -0.46
COMMD9-208ENST00000533643 CLCN6P51797 869 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 ZNF33AQ06730 810 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 SLC20A2Q08357 652 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 AP1B1Q10567 949 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 BYSLQ13895 437 aaKnown RBP12.15□□□□□ -0.46
COMMD9-208ENST00000533643 CCINQ13939 588 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 OASLQ15646 514 aaKnown RBP12.15□□□□□ -0.46
COMMD9-208ENST00000533643 CYP1B1Q16678 543 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 WHAMMP3Q1A5X7 153 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 RETSATQ6NUM9 610 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 DRICH1Q6PGQ1 229 aaPredicted RBP12.15□□□□□ -0.46
COMMD9-208ENST00000533643 DARS2Q6PI48 645 aaKnown RBP12.15□□□□□ -0.46
COMMD9-208ENST00000533643 C12orf50Q8NA57 414 aaPredicted RBP12.15□□□□□ -0.46
COMMD9-208ENST00000533643 MAML1Q92585 1016 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 EDAQ92838 391 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 NKD2Q969F2 451 aaPredicted RBP12.15□□□□□ -0.46
COMMD9-208ENST00000533643 RPL10LQ96L21 214 aaKnown RBP12.15□□□□□ -0.46
COMMD9-208ENST00000533643 ZNF599Q96NL3 588 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 USP29Q9HBJ7 922 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 HOMER3Q9NSC5 361 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 UBA2Q9UBT2 640 aaPredicted RBP12.15□□□□□ -0.46
COMMD9-208ENST00000533643 SLCO3A1Q9UIG8 710 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 HS3ST2Q9Y278 367 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 MTF2Q9Y483 593 aaPredicted RBP12.15□□□□□ -0.46
COMMD9-208ENST00000533643 MRFAP1Q9Y605 127 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 CHD5Q8TDI0 1954 aa12.15□□□□□ -0.46
COMMD9-208ENST00000533643 KANSL1LA0AUZ9 987 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 BCLAF3A2AJT9 711 aaKnown RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 KCNK1O00180 336 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 SMAD6O43541 496 aaKnown RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 DCXO43602 365 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 JCHAINP01591 159 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 SRPRAP08240 638 aaKnown RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 SRCP12931 536 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 CCNB1P14635 433 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 HNRNPLP14866 589 aaKnown RBP eCLIP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 TARSP26639 723 aaKnown RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 RBL1P28749 1068 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 KIR2DL1P43626 348 aaPredicted RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 KCNJ1P48048 391 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 SERPINH1P50454 418 aaKnown RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 SEC13P55735 322 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 GEMIN4P57678 1058 aaKnown RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 IFI35P80217 286 aaPredicted RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 SLC10A7Q0GE19 358 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 CYTH1Q15438 398 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 INO80DQ53TQ3 878 aaPredicted RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 FAM182AQ5T1J6 154 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 TMCO4Q5TGY1 634 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 EGFLAMQ63HQ2 1017 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 TIGD7Q6NT04 549 aaPredicted RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 TTC27Q6P3X3 843 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 ZNF572Q7Z3I7 529 aaPredicted RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 CDKL3Q8IVW4 592 aaPredicted RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 SH2D3CQ8N5H7 860 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 TEX26Q8N6G2 289 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 UCMAQ8WVF2 138 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 MAGOHBQ96A72 148 aaKnown RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 MYO19Q96H55 970 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 FOXQ1Q9C009 403 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 TBC1D17Q9HA65 648 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 LTB4R2Q9NPC1 389 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 RBM12Q9NTZ6 932 aaKnown RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 SEPT10Q9P0V9 454 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 THAP10Q9P2Z0 257 aaPredicted RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 SLC25A13Q9UJS0 675 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 PLA2G4CQ9UP65 541 aa12.14□□□□□ -0.47
COMMD9-208ENST00000533643 DRG1Q9Y295 367 aaKnown RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 MRPS17Q9Y2R5 130 aaKnown RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 NYNRINQ9P2P1 1898 aaKnown RBP12.14□□□□□ -0.47
COMMD9-208ENST00000533643 VCANP13611 3396 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 MIA3Q5JRA6 1907 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 GOLGA6L10A0A0M3HER8 536 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 FAM170BA6NMN3 283 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 ATP9BO43861 1147 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 PHF2O75151 1096 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 ZNF821O75541 412 aaPredicted RBP12.13□□□□□ -0.47
COMMD9-208ENST00000533643 TMCC1O94876 653 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 ITGAVP06756 1048 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 CHRNB1P11230 501 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 TIE1P35590 1138 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 COILP38432 576 aaPredicted RBP12.13□□□□□ -0.47
COMMD9-208ENST00000533643 SIGLEC14Q08ET2 396 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 WASHC5Q12768 1159 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 ZBTB17Q13105 803 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 FZD5Q13467 585 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 HNRNPDQ14103 355 aaKnown RBP12.13□□□□□ -0.47
COMMD9-208ENST00000533643 ZNF234Q14588 700 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 RFTN1Q14699 578 aaPredicted RBP12.13□□□□□ -0.47
COMMD9-208ENST00000533643 LBRQ14739 615 aaKnown RBP12.13□□□□□ -0.47
COMMD9-208ENST00000533643 FNDC3BQ53EP0 1204 aaKnown RBP12.13□□□□□ -0.47
COMMD9-208ENST00000533643 DGKKQ5KSL6 1271 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 DNTTIP2Q5QJE6 756 aaKnown RBP12.13□□□□□ -0.47
COMMD9-208ENST00000533643 FAM71DQ8N9W8 422 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 ATP11CQ8NB49 1132 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 KDM1BQ8NB78 822 aa12.13□□□□□ -0.47
COMMD9-208ENST00000533643 SPATA4Q8NEY3 305 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms