RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 HADHQ16836 314 aaKnown RBP20.29■□□□□ 0.84
CPSF1-209ENST00000532725 ATP13A4Q4VNC1 1196 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 LPCAT2Q7L5N7 544 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 CACUL1Q86Y37 369 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 MMAAQ8IVH4 418 aaKnown RBP20.29■□□□□ 0.84
CPSF1-209ENST00000532725 TMEFF1Q8IYR6 380 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 FAM71BQ8TC56 605 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 TOE1Q96GM8 510 aaKnown RBP20.29■□□□□ 0.84
CPSF1-209ENST00000532725 LRRC19Q9H756 370 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.29■□□□□ 0.84
CPSF1-209ENST00000532725 HPCAL4Q9UM19 191 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 ACTL7AQ9Y615 435 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 PLXND1Q9Y4D7 1925 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 NUP205Q92621 2012 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 MCF2LO15068 1137 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 EPN2O95208 641 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 NDUFA10O95299 355 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 DNTTP04053 509 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 SSR1P43307 286 aaKnown RBP20.28■□□□□ 0.84
CPSF1-209ENST00000532725 SERPINH1P50454 418 aaKnown RBP20.28■□□□□ 0.84
CPSF1-209ENST00000532725 ARSEP51690 589 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 NDST2P52849 883 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 SERINC3Q13530 473 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 SPA17Q15506 151 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 PARP15Q460N3 678 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 AFMIDQ63HM1 303 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 RAD9BQ6WBX8 426 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 Q6ZVU0 165 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 TMEM139Q8IV31 216 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 OR2A12Q8NGT7 310 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 TSC1Q92574 1164 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 HMCESQ96FZ2 354 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 ZNF419Q96HQ0 510 aaPredicted RBP20.28■□□□□ 0.84
CPSF1-209ENST00000532725 BAG1Q99933 345 aaPredicted RBP20.28■□□□□ 0.84
CPSF1-209ENST00000532725 PABPC3Q9H361 631 aaKnown RBP20.28■□□□□ 0.84
CPSF1-209ENST00000532725 PCDH18Q9HCL0 1135 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 PPM1HQ9ULR3 514 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 SCML1Q9UN30 329 aa20.28■□□□□ 0.84
CPSF1-209ENST00000532725 THADAQ6YHU6 1953 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 H3BRJ5 948 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 AMPD1P23109 780 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 SLC8A1P32418 973 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 PTGER3P43115 390 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 RPL6Q02878 288 aaKnown RBP20.27■□□□□ 0.84
CPSF1-209ENST00000532725 CST6Q15828 149 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 DEFB119Q8N690 84 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 CSPG4P5Q96PW8 444 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 CEP44Q9C0F1 390 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 SLC39A8Q9C0K1 460 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 ARRDC1-AS1Q9H2J1 176 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 SARDHQ9UL12 918 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 TFR2Q9UP52 801 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 PCDHGA5Q9Y5G8 931 aa20.27■□□□□ 0.84
CPSF1-209ENST00000532725 BCLAF3A2AJT9 711 aaKnown RBP20.26■□□□□ 0.83
CPSF1-209ENST00000532725 TMEM110-MUSTN1A8MSY1 372 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 ALOX15BO15296 676 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 MID1O15344 667 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 NDUFS2O75306 463 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 ARL4AP40617 200 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 DHPSP49366 369 aaPredicted RBP20.26■□□□□ 0.83
CPSF1-209ENST00000532725 HADHBP55084 474 aaKnown RBP20.26■□□□□ 0.83
CPSF1-209ENST00000532725 SPEM2Q0P670 501 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 C22orf39Q6P5X5 142 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 USP30Q70CQ3 517 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 SLC41A1Q8IVJ1 513 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 ARHGAP12Q8IWW6 846 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 OR8D1Q8WZ84 308 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 ISG20Q96AZ6 181 aaKnown RBP20.26■□□□□ 0.83
CPSF1-209ENST00000532725 CELF6Q96J87 481 aaKnown RBP20.26■□□□□ 0.83
CPSF1-209ENST00000532725 HINFPQ9BQA5 517 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 PARD6AQ9NPB6 346 aa20.26■□□□□ 0.83
CPSF1-209ENST00000532725 FCF1Q9Y324 198 aaKnown RBP20.26■□□□□ 0.83
CPSF1-209ENST00000532725 REXO2Q9Y3B8 237 aaKnown RBP20.26■□□□□ 0.83
CPSF1-209ENST00000532725 RCCD1A6NED2 376 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 ZSCAN5CA6NGD5 496 aaPredicted RBP20.25■□□□□ 0.83
CPSF1-209ENST00000532725 BUB1O43683 1085 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 LRP3O75074 770 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 IL1BP01584 269 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 CD48P09326 243 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 C5AR1P21730 350 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 ACSL1P33121 698 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 PAPOLAP51003 745 aaKnown RBP20.25■□□□□ 0.83
CPSF1-209ENST00000532725 CDH6P55285 790 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 GEMIN4P57678 1058 aaKnown RBP20.25■□□□□ 0.83
CPSF1-209ENST00000532725 TTC31Q49AM3 519 aaPredicted RBP20.25■□□□□ 0.83
CPSF1-209ENST00000532725 PLA2G2CQ5R387 149 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 LEKR1Q6ZMV7 388 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 FAM124AQ86V42 546 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 PLPP6Q8IY26 295 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 LZTR1Q8N653 840 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 PCDH20Q8N6Y1 951 aaKnown RBP20.25■□□□□ 0.83
CPSF1-209ENST00000532725 NPWQ8N729 165 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 GPR174Q9BXC1 333 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 NEUROG2Q9H2A3 272 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 TNKS2Q9H2K2 1166 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 ETNK2Q9NVF9 386 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 FBXL12Q9NXK8 326 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 RCOR3Q9P2K3 495 aaPredicted RBP20.25■□□□□ 0.83
CPSF1-209ENST00000532725 SERGEFQ9UGK8 458 aa20.25■□□□□ 0.83
CPSF1-209ENST00000532725 MFHAS1Q9Y4C4 1052 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms