RNA–Protein interactions for RNA: ENST00000532540.5

TGFBR3-209, Transcript of transforming growth factor beta receptor 3, humanhuman

TSL 1 (best)

Gene TGFBR3, Length 3,913 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFBR3-209ENST00000532540 ZSCAN18Q8TBC5 510 aaPredicted RBP6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 PIWIL2Q8TC59 973 aaKnown RBP6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 LRRC20Q8TCA0 184 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 SLC35B4Q969S0 331 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 KLHL32Q96NJ5 620 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 KLC2Q9H0B6 622 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 AVENQ9NQS1 362 aaPredicted RBP6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 C8orf4Q9NR00 106 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 SMYD2Q9NRG4 433 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 ZDHHC7Q9NXF8 308 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 SLC17A7Q9P2U7 560 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 VAV3Q9UKW4 847 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 ITGA11Q9UKX5 1188 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 PRPF19Q9UMS4 504 aaKnown RBP6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 SHOC2Q9UQ13 582 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 IFT52Q9Y366 437 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 MKI67P46013 3256 aaKnown RBP6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 VILLO15195 856 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 TBC1D4O60343 1298 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 FOXD2O60548 495 aaPredicted RBP6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 SNX2O60749 519 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 TMCC2O75069 709 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 DUSP11O75319 330 aaKnown RBP6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 ALOX12P18054 663 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 SAT1P21673 171 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 TYK2P29597 1187 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 LRPAP1P30533 357 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 MARCKSL1P49006 195 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 SLC18A1P54219 525 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 ARHGAP1Q07960 439 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 DPYSQ14117 519 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 SMUG1Q53HV7 270 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 ATAD3BQ5T9A4 648 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 ATF7IP2Q5U623 682 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 SPOPLQ6IQ16 392 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 ABRAXAS1Q6UWZ7 409 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 C4orf32Q8N8J7 132 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 ZNF555Q8NEP9 628 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 CLIP3Q96DZ5 547 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 ADAM2Q99965 735 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 HSD17B14Q9BPX1 270 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 GANQ9H2C0 597 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 CCDC177Q9NQR7 707 aaPredicted RBP6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 RBAKQ9NYW8 714 aaPredicted RBP6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 XPO7Q9UIA9 1087 aaKnown RBP6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 BTBD3Q9Y2F9 522 aa6.9□□□□□ -1.3
TGFBR3-209ENST00000532540 NCANO14594 1321 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 COL24A1Q17RW2 1714 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 H0YC42 278 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 KMOO15229 486 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 CRCPO75575 148 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 ZMPSTE24O75844 475 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 FBXO21O94952 628 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 MED26O95402 600 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 CYP3A4P08684 503 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 IL12AP29459 219 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 SLC9A3P48764 834 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 CLK3P49761 638 aaKnown RBP6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 EPC2Q52LR7 807 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 PAGE2BQ5JRK9 111 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 ABHD15Q6UXT9 468 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 SLC26A11Q86WA9 606 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 SNX32Q86XE0 403 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 HACE1Q8IYU2 909 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 ASCC1Q8N9N2 400 aaKnown RBP6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 ACMSDQ8TDX5 336 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 ISOC1Q96CN7 298 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 B3GALT6Q96L58 329 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 ZNF717Q9BY31 904 aaPredicted RBP6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 MRPL4Q9BYD3 311 aaKnown RBP6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 TMEM117Q9H0C3 514 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 SNTG2Q9NY99 539 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 MAP3K20Q9NYL2 800 aaKnown RBP6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 ZC3H7BQ9UGR2 993 aaKnown RBP6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 KLHL20Q9Y2M5 609 aa6.9□□□□□ -1.31
TGFBR3-209ENST00000532540 MYOCOSA0A1B0GUC4 107 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 ANKRD34BA5PLL1 514 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 ANKRD63C9JTQ0 380 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 TSC22D2O75157 780 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 COX4I1P13073 169 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 KRT20P35900 424 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 GPD2P43304 727 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 GPC3P51654 580 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 AKR1D1P51857 326 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 CSE1LP55060 971 aaKnown RBP6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 STX5Q13190 355 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 HNRNPDQ14103 355 aaKnown RBP6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 RALGPS1Q5JS13 557 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 BROXQ5VW32 411 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 DNAJC24Q6P3W2 148 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 NECAB2Q7Z6G3 386 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 BEST2Q8NFU1 509 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 SLC30A5Q8TAD4 765 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 TRUB1Q8WWH5 349 aaKnown RBP6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 PTCD3Q96EY7 689 aaKnown RBP6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 MED10Q9BTT4 135 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 HERC2P3Q9BVR0 1158 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 ACAT2Q9BWD1 397 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 KRBA1A5PL33 1030 aa6.89□□□□□ -1.31
TGFBR3-209ENST00000532540 FAM172BPA6NC97 362 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms