RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TMCO4Q5TGY1 634 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 LRIG3Q6UXM1 1119 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 OTOP3Q7RTS5 596 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 MFN1Q8IWA4 741 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 TEX26Q8N6G2 289 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 BHMTQ93088 406 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 C9orf72Q96LT7 481 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 TTC25Q96NG3 672 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 FCRL5Q96RD9 977 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 ACE2Q9BYF1 805 aaPredicted RBP21.43■■□□□ 1.02
VPS28-208ENST00000527797 XAB2Q9HCS7 855 aaKnown RBP21.43■■□□□ 1.02
VPS28-208ENST00000527797 GOLGA6AQ9NYA3 693 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 TTLL3Q9Y4R7 772 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 NUP205Q92621 2012 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 NOTCH4Q99466 2003 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 MMP13P45452 471 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 IFNAR2P48551 515 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 TNK2Q07912 1038 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 CBLBQ13191 982 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 SLC29A2Q14542 456 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 LBRQ14739 615 aaKnown RBP21.42■■□□□ 1.02
VPS28-208ENST00000527797 MSS51Q4VC12 460 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 DNAJC21Q5F1R6 531 aaKnown RBP21.42■■□□□ 1.02
VPS28-208ENST00000527797 FSCBQ5H9T9 825 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 CAND1Q86VP6 1230 aaKnown RBP21.42■■□□□ 1.02
VPS28-208ENST00000527797 NPAS3Q8IXF0 933 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 OTUB2Q96DC9 234 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 GORASP1Q9BQQ3 440 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 PDFQ9HBH1 243 aa21.42■■□□□ 1.02
VPS28-208ENST00000527797 AAR2Q9Y312 384 aaKnown RBP21.42■■□□□ 1.02
VPS28-208ENST00000527797 SLC9A3R1O14745 358 aaPredicted RBP21.41■■□□□ 1.02
VPS28-208ENST00000527797 ANXA9O76027 345 aa21.41■■□□□ 1.02
VPS28-208ENST00000527797 ACSL3O95573 720 aa21.41■■□□□ 1.02
VPS28-208ENST00000527797 AP2A1O95782 977 aa21.41■■□□□ 1.02
VPS28-208ENST00000527797 MLNP12872 115 aa21.41■■□□□ 1.02
VPS28-208ENST00000527797 LRIT3Q3SXY7 679 aa21.41■■□□□ 1.02
VPS28-208ENST00000527797 HP1BP3Q5SSJ5 553 aaPredicted RBP21.41■■□□□ 1.02
VPS28-208ENST00000527797 PYROXD1Q8WU10 500 aa21.41■■□□□ 1.02
VPS28-208ENST00000527797 ZNF419Q96HQ0 510 aaPredicted RBP21.41■■□□□ 1.02
VPS28-208ENST00000527797 MLPHQ9BV36 600 aaPredicted RBP21.41■■□□□ 1.02
VPS28-208ENST00000527797 NT5MQ9NPB1 228 aa21.41■■□□□ 1.02
VPS28-208ENST00000527797 CHD7Q9P2D1 2997 aa21.41■■□□□ 1.02
VPS28-208ENST00000527797 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.4■■□□□ 1.02
VPS28-208ENST00000527797 AGPSO00116 658 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 CBX4O00257 560 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 AVILO75366 819 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 BANF1O75531 89 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 NUDT17P0C025 328 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 EIF3BP55884 814 aaKnown RBP21.4■■□□□ 1.02
VPS28-208ENST00000527797 FASTKD3Q14CZ7 662 aaKnown RBP21.4■■□□□ 1.02
VPS28-208ENST00000527797 KCTD11Q693B1 232 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 LRRC8BQ6P9F7 803 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 LEKR1Q6ZMV7 388 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 ZNF534Q76KX8 674 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 BBS5Q8N3I7 341 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 KIAA1958Q8N8K9 716 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 FGF13Q92913 245 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 ZBTB9Q96C00 473 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 HAUS2Q9NVX0 235 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 PLK2Q9NYY3 685 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 GDE1Q9NZC3 331 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 UBA2Q9UBT2 640 aaPredicted RBP21.4■■□□□ 1.02
VPS28-208ENST00000527797 LAMA2P24043 3122 aaKnown RBP21.4■■□□□ 1.02
VPS28-208ENST00000527797 DOCK6Q96HP0 2047 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 NYNRINQ9P2P1 1898 aaKnown RBP21.4■■□□□ 1.02
VPS28-208ENST00000527797 OPA1O60313 960 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 SUN1O94901 812 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 MZF1P28698 734 aaPredicted RBP21.4■■□□□ 1.02
VPS28-208ENST00000527797 NUMBP49757 651 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 GEMP55040 296 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 ITKQ08881 620 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 IFFO1Q0D2I5 559 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 MTM1Q13496 603 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 ZNF235Q14590 738 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 RFTN1Q14699 578 aaPredicted RBP21.4■■□□□ 1.02
VPS28-208ENST00000527797 ATAT1Q5SQI0 421 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 UBAP2Q5T6F2 1119 aaKnown RBP21.4■■□□□ 1.02
VPS28-208ENST00000527797 FYB2Q5VWT5 728 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 RNF43Q68DV7 783 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 GET4Q7L5D6 327 aaPredicted RBP21.4■■□□□ 1.02
VPS28-208ENST00000527797 ANKMY2Q8IV38 441 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.4■■□□□ 1.02
VPS28-208ENST00000527797 FBXO36Q8NEA4 188 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 FIBINQ8TAL6 211 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 WFDC5Q8TCV5 224 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 SMARCD2Q92925 531 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 FEM1AQ9BSK4 669 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 SLC25A51Q9H1U9 297 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 LINC00597Q9H2U6 94 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 LRRC40Q9H9A6 602 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 KIAA1522Q9P206 1035 aaPredicted RBP21.4■■□□□ 1.02
VPS28-208ENST00000527797 VPS28Q9UK41 221 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 NFS1Q9Y697 457 aa21.4■■□□□ 1.02
VPS28-208ENST00000527797 CSKP41240 450 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 GRIA1P42261 906 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 SPARCL1Q14515 664 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 CCDC38Q502W7 563 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 FAM78AQ5JUQ0 283 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 CES5AQ6NT32 575 aa21.39■■□□□ 1.01
VPS28-208ENST00000527797 TMEM25Q86YD3 366 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms