RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	FAR1	Q8WVX9	515 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	TBC1D20	Q96BZ9	403 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	CAMK1G	Q96NX5	476 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	PPP1R10	Q96QC0	940 aa	Known RBP	5.07	□□□□□ -1.6
CD44-223	ENST00000526553	TEFM	Q96QE5	360 aa	Known RBP	5.07	□□□□□ -1.6
CD44-223	ENST00000526553	WDR77	Q9BQA1	342 aa	Predicted RBP	5.07	□□□□□ -1.6
CD44-223	ENST00000526553	HERPUD2	Q9BSE4	406 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	ISCU	Q9H1K1	167 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	ACAD9	Q9H845	621 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	RMI1	Q9H9A7	625 aa		5.07	□□□□□ -1.6
CD44-223	ENST00000526553	MRPL44	Q9H9J2	332 aa	Known RBP	5.07	□□□□□ -1.6
CD44-223	ENST00000526553	KRCC1	Q9NPI7	259 aa	Predicted RBP	5.07	□□□□□ -1.6
CD44-223	ENST00000526553	MORC2	Q9Y6X9	1032 aa	Predicted RBP	5.07	□□□□□ -1.6
CD44-223	ENST00000526553	RPS10-NUDT3	A0A1W2PQS6	291 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553		B9A039	149 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	ALPL	P05186	524 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	MYZAP	P0CAP1	466 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	GJC1	P36383	396 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	RFX2	P48378	723 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	THBS3	P49746	956 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	HTR6	P50406	440 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	CLCNKB	P51801	687 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	BYSL	Q13895	437 aa	Known RBP	5.06	□□□□□ -1.6
CD44-223	ENST00000526553	TAF5	Q15542	800 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	SLC16A12	Q6ZSM3	486 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	HERC6	Q8IVU3	1022 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	FAM217A	Q8IXS0	508 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	LRRC57	Q8N9N7	239 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	SCAI	Q8N9R8	606 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	LINS1	Q8NG48	757 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	GABPB2	Q8TAK5	448 aa	Predicted RBP	5.06	□□□□□ -1.6
CD44-223	ENST00000526553	NCSTN	Q92542	709 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	RILPL2	Q969X0	211 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	LYZL4	Q96KX0	146 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	KLHL31	Q9H511	634 aa		5.06	□□□□□ -1.6
CD44-223	ENST00000526553	STX16-NPEPL1	H3BU86	382 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	STX16	O14662	325 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	TNFRSF13B	O14836	293 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-223	ENST00000526553	RNMT	O43148	476 aa	Known RBP	5.05	□□□□□ -1.6
CD44-223	ENST00000526553	CHRNB2	P17787	502 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	CDC25A	P30304	524 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	HAL	P42357	657 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	PAPOLA	P51003	745 aa	Known RBP	5.05	□□□□□ -1.6
CD44-223	ENST00000526553	SELENOV	P59797	346 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	ARHGAP8	P85298	464 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	DUSP6	Q16828	381 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	CBWD5	Q5RIA9	395 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	ANKRD45	Q5TZF3	282 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	TMEM268	Q5VZI3	342 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	DENND1B	Q6P3S1	775 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	WDR5B	Q86VZ2	330 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	C2CD5	Q86YS7	1000 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	SUGP1	Q8IWZ8	645 aa	Known RBP	5.05	□□□□□ -1.6
CD44-223	ENST00000526553	ZDHHC23	Q8IYP9	409 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	ENGASE	Q8NFI3	743 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	CEP70	Q8NHQ1	597 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	ASB5	Q8WWX0	329 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	PPM1E	Q8WY54	764 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	MASTL	Q96GX5	879 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	RBM17	Q96I25	401 aa	Known RBP	5.05	□□□□□ -1.6
CD44-223	ENST00000526553	ZNF333	Q96JL9	665 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	MARK4	Q96L34	752 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	FBXO40	Q9UH90	709 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	CD207	Q9UJ71	328 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	ICK	Q9UPZ9	632 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553	RRP7A	Q9Y3A4	280 aa	Known RBP	5.05	□□□□□ -1.6
CD44-223	ENST00000526553	RAP2C	Q9Y3L5	183 aa		5.05	□□□□□ -1.6
CD44-223	ENST00000526553		A0A0A0MQY5	61 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	C17orf102	A2RUQ5	167 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	STRN	O43815	780 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	CNP	P09543	421 aa	Known RBP	5.04	□□□□□ -1.6
CD44-223	ENST00000526553	ARSB	P15848	533 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	ARRB2	P32121	409 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	SKIV2L2	P42285	1042 aa	Known RBP	5.04	□□□□□ -1.6
CD44-223	ENST00000526553	MTNR1A	P48039	350 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	KCNJ4	P48050	445 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	GOLGA8F	Q08AF8	430 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	SYTL3	Q4VX76	610 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	FBXO47	Q5MNV8	452 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	LDHAL6A	Q6ZMR3	332 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	ANKRD44	Q8N8A2	993 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	USP38	Q8NB14	1042 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	NAF1	Q96HR8	494 aa	Known RBP	5.04	□□□□□ -1.6
CD44-223	ENST00000526553	URB1-AS1	Q96HZ7	61 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	SF3B5	Q9BWJ5	86 aa	Known RBP	5.04	□□□□□ -1.6
CD44-223	ENST00000526553	PLAC1	Q9HBJ0	212 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	NOD2	Q9HC29	1040 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	ITM2C	Q9NQX7	267 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	GRHL1	Q9NZI5	618 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	DHDH	Q9UQ10	334 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	DNAJC16	Q9Y2G8	782 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	PCDHGB3	Q9Y5G1	929 aa		5.04	□□□□□ -1.6
CD44-223	ENST00000526553	OR6C68	A6NDL8	312 aa		5.03	□□□□□ -1.6
CD44-223	ENST00000526553	STMND1	H3BQB6	276 aa		5.03	□□□□□ -1.6
CD44-223	ENST00000526553	SMAD6	O43541	496 aa	Known RBP	5.03	□□□□□ -1.6
CD44-223	ENST00000526553	KIF1C	O43896	1103 aa	Known RBP	5.03	□□□□□ -1.6
CD44-223	ENST00000526553	PIP5K1C	O60331	668 aa		5.03	□□□□□ -1.6
CD44-223	ENST00000526553	HBP1	O60381	514 aa		5.03	□□□□□ -1.6
CD44-223	ENST00000526553	RXRA	P19793	462 aa		5.03	□□□□□ -1.6
CD44-223	ENST00000526553	ENTPD1	P49961	510 aa		5.03	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms