RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SCN4AP35499 1836 aa21.6■■□□□ 1.05
VPS28-205ENST00000526204 KPNA6O60684 536 aa21.6■■□□□ 1.05
VPS28-205ENST00000526204 ANXA9O76027 345 aa21.6■■□□□ 1.05
VPS28-205ENST00000526204 POLD2P49005 469 aa21.6■■□□□ 1.05
VPS28-205ENST00000526204 USP4Q13107 963 aa21.6■■□□□ 1.05
VPS28-205ENST00000526204 TIGD5Q53EQ6 642 aa21.6■■□□□ 1.05
VPS28-205ENST00000526204 PCID2Q5JVF3 399 aa21.6■■□□□ 1.05
VPS28-205ENST00000526204 FAM171BQ6P995 826 aa21.6■■□□□ 1.05
VPS28-205ENST00000526204 RAPH1Q70E73 1250 aa21.6■■□□□ 1.05
VPS28-205ENST00000526204 ZC3HC1Q86WB0 502 aaKnown RBP21.6■■□□□ 1.05
VPS28-205ENST00000526204 CNTD1Q8N815 330 aa21.6■■□□□ 1.05
VPS28-205ENST00000526204 TDRD5Q8NAT2 981 aaKnown RBP21.6■■□□□ 1.05
VPS28-205ENST00000526204 ACE2Q9BYF1 805 aaPredicted RBP21.6■■□□□ 1.05
VPS28-205ENST00000526204 DMAP1Q9NPF5 467 aaPredicted RBP21.6■■□□□ 1.05
VPS28-205ENST00000526204 ARHGAP26Q9UNA1 814 aa21.6■■□□□ 1.05
VPS28-205ENST00000526204 DCXO43602 365 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 CABYRO75952 493 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 COL6A2P12110 1019 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 PSEN1P49768 467 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 SCNN1GP51170 649 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 RWDD4Q6NW29 188 aaKnown RBP21.59■■□□□ 1.05
VPS28-205ENST00000526204 TMEM154Q6P9G4 183 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 ZYG11AQ6WRX3 759 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 LZTR1Q8N653 840 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 DQX1Q8TE96 717 aaKnown RBP21.59■■□□□ 1.05
VPS28-205ENST00000526204 TTC1Q99614 292 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 APBA2Q99767 749 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 TASP1Q9H6P5 420 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.59■■□□□ 1.05
VPS28-205ENST00000526204 ABCG1P45844 678 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 GRM3Q14832 879 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 GSTA3Q16772 222 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 RALGPS1Q5JS13 557 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 LIPMQ5VYY2 423 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 PKN3Q6P5Z2 889 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 OTOP3Q7RTS5 596 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 CCDC117Q8IWD4 279 aaPredicted RBP21.59■■□□□ 1.05
VPS28-205ENST00000526204 LPPQ93052 612 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 FCRL5Q96RD9 977 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 HAPLN3Q96S86 360 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 RTP3Q9BQQ7 232 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 GATA5Q9BWX5 397 aaPredicted RBP21.59■■□□□ 1.05
VPS28-205ENST00000526204 RHOBTB2Q9BYZ6 727 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 S100A14Q9HCY8 104 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 ARHGEF38Q9NXL2 777 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 RAP2CQ9Y3L5 183 aa21.59■■□□□ 1.05
VPS28-205ENST00000526204 ZNF638Q14966 1978 aaKnown RBP21.59■■□□□ 1.05
VPS28-205ENST00000526204 DPPA5A6NC42 116 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 CASTOR2A6NHX0 329 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 BAG2O95816 211 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 NUMBP49757 651 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 DSG1Q02413 1049 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 SLC12A1Q13621 1099 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 USP10Q14694 798 aaKnown RBP21.58■■□□□ 1.05
VPS28-205ENST00000526204 BRMS1LQ5PSV4 323 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 AGMOQ6ZNB7 445 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 MRPL10Q7Z7H8 261 aaKnown RBP21.58■■□□□ 1.05
VPS28-205ENST00000526204 PHTF2Q8N3S3 785 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 ATPAF2Q8N5M1 289 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 STON2Q8WXE9 905 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 TBL1YQ9BQ87 522 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 OXCT2Q9BYC2 517 aaPredicted RBP21.58■■□□□ 1.05
VPS28-205ENST00000526204 DRC3Q9H069 523 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 TCF7L2Q9NQB0 619 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 CPSF2Q9P2I0 782 aaKnown RBP21.58■■□□□ 1.05
VPS28-205ENST00000526204 SCOCQ9UIL1 159 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 CDH22Q9UJ99 828 aa21.58■■□□□ 1.05
VPS28-205ENST00000526204 TRIP12Q14669 1992 aaPredicted RBP21.58■■□□□ 1.04
VPS28-205ENST00000526204 EIF4E1BA6NMX2 242 aaKnown RBP21.58■■□□□ 1.04
VPS28-205ENST00000526204 SKAP2O75563 359 aaPredicted RBP21.58■■□□□ 1.04
VPS28-205ENST00000526204 IGLV3-25P01717 112 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 CYP11A1P05108 521 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 COX4I1P13073 169 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 GLDCP23378 1020 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 BDNFP23560 247 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 KLF10Q13118 480 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 SLC9B1Q4ZJI4 515 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 CNTN4Q8IWV2 1026 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 SLC25A41Q8N5S1 370 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 PTCD2Q8WV60 388 aaKnown RBP21.58■■□□□ 1.04
VPS28-205ENST00000526204 RTKNQ9BST9 563 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 C1QTNF1Q9BXJ1 281 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 DSEQ9UL01 958 aa21.58■■□□□ 1.04
VPS28-205ENST00000526204 DFFAO00273 331 aa21.57■■□□□ 1.04
VPS28-205ENST00000526204 MATN2O00339 956 aa21.57■■□□□ 1.04
VPS28-205ENST00000526204 GPR182O15218 404 aa21.57■■□□□ 1.04
VPS28-205ENST00000526204 FGF10O15520 208 aaPredicted RBP21.57■■□□□ 1.04
VPS28-205ENST00000526204 LINGO3P0C6S8 592 aa21.57■■□□□ 1.04
VPS28-205ENST00000526204 PAX3P23760 479 aa21.57■■□□□ 1.04
VPS28-205ENST00000526204 CRABP2P29373 138 aa21.57■■□□□ 1.04
VPS28-205ENST00000526204 RGS2P41220 211 aa21.57■■□□□ 1.04
VPS28-205ENST00000526204 KBTBD2Q8IY47 623 aa21.57■■□□□ 1.04
VPS28-205ENST00000526204 ACVR1CQ8NER5 493 aa21.57■■□□□ 1.04
VPS28-205ENST00000526204 NR1H4Q96RI1 486 aaPredicted RBP21.57■■□□□ 1.04
VPS28-205ENST00000526204 CATSPERBQ9H7T0 1116 aa21.57■■□□□ 1.04
VPS28-205ENST00000526204 PPM1HQ9ULR3 514 aa21.57■■□□□ 1.04
VPS28-205ENST00000526204 LOC100653049A0A140TA62 436 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 E9PBE3 544 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 SLCO1B7G3V0H7 640 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 GOLGA8TH3BQL2 631 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms