RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 C17orf102A2RUQ5 167 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 STAU1O95793 577 aaKnown RBP13.48□□□□□ -0.25
TCOF1-214ENST00000515035 ABCG1P45844 678 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 LIN52Q52LA3 116 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 C3orf67Q6ZVT6 689 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 ARCQ7LC44 396 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 GPC2Q8N158 579 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 GMCL1P1Q8NEA9 526 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 GSTCDQ8NEC7 633 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 RP9Q8TA86 221 aaKnown RBP13.48□□□□□ -0.25
TCOF1-214ENST00000515035 PPP1R14AQ96A00 147 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 TIMMDC1Q9NPL8 285 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 TRNAU1APQ9NX07 287 aaKnown RBP13.48□□□□□ -0.25
TCOF1-214ENST00000515035 ZNF222Q9UK12 451 aa13.48□□□□□ -0.25
TCOF1-214ENST00000515035 A0A0B4J269 797 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 H3BMM5 538 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 SPTLC1O15269 473 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ERVK-10P10266 1014 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 MMP13P45452 471 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 BST2Q10589 180 aaKnown RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ARRDC4Q8NCT1 418 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 CCDC28BQ9BUN5 200 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 TRHDEQ9UKU6 1024 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 MTF2Q9Y483 593 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 CXCL11O14625 94 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 EDF1O60869 148 aaKnown RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 SQLEQ14534 574 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 PPP1R14BQ96C90 147 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ZNF180Q9UJW8 692 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 USP12O75317 370 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 LGR5O75473 907 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 DDNO94850 711 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 SERPINF2P08697 491 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 STAG3L1P0CL83 205 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ITGB6P18564 788 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 MIPP30301 263 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 GUCA1AP43080 201 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 PYDC2Q56P42 97 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 EARS2Q5JPH6 523 aaKnown RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 NBPF12Q5TAG4 269 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 EGFLAMQ63HQ2 1017 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 DUPD1Q68J44 220 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 SCARA3Q6AZY7 606 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ZCCHC8Q6NZY4 707 aaKnown RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 IL27RAQ6UWB1 636 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ILDR1Q86SU0 546 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 OOSP2Q86WS3 158 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 FAM47BQ8NA70 645 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 MYDGFQ969H8 173 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 RCN3Q96D15 328 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ZMYM5Q9UJ78 669 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 WBP11Q9Y2W2 641 aaKnown RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 MANSC4A6NHS7 340 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 BTN3A1O00481 513 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 RCVRNP35243 200 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 SCNN1BP51168 640 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 BNC1Q01954 994 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 FAM187BQ17R55 369 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ALYREFQ86V81 257 aaKnown RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ADGRF2Q8IZF7 708 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 PQLC1Q8N2U9 271 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 PRELID2Q8N945 189 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 DNAJB14Q8TBM8 379 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 MAGEC3Q8TD91 643 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 PNMA5Q96PV4 448 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 HGH1Q9BTY7 390 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 MAN1C1Q9NR34 630 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 NWD1Q149M9 1564 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 RGS14O43566 566 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 B3GAT3O94766 335 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ALDH1A2O94788 518 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 UPP2O95045 317 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 GJB6O95452 261 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 HPGDP15428 266 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 YWHAQP27348 245 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 GRK3P35626 688 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 PRKCIP41743 596 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 PSMD4P55036 377 aaKnown RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 YWHAZP63104 245 aaKnown RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ILF2Q12905 390 aaKnown RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 CBWD3Q5JTY5 395 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 CBWD5Q5RIA9 395 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ARMC6Q6NXE6 501 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 ART4Q93070 314 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 OSBPL6Q9BZF3 934 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 TRMT13Q9NUP7 481 aaKnown RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 LNPEPQ9UIQ6 1025 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 TSPAN16Q9UKR8 245 aa13.47□□□□□ -0.25
TCOF1-214ENST00000515035 RBMX2Q9Y388 322 aaKnown RBP13.47□□□□□ -0.25
TCOF1-214ENST00000515035 UBE2QL1A1L167 161 aa13.46□□□□□ -0.25
TCOF1-214ENST00000515035 DPPA5A6NC42 116 aa13.46□□□□□ -0.25
TCOF1-214ENST00000515035 RCCD1A6NED2 376 aa13.46□□□□□ -0.25
TCOF1-214ENST00000515035 HDAC3O15379 428 aa13.46□□□□□ -0.25
TCOF1-214ENST00000515035 KCNH1O95259 989 aa13.46□□□□□ -0.25
TCOF1-214ENST00000515035 PMF1Q6P1K2 205 aa13.46□□□□□ -0.25
TCOF1-214ENST00000515035 OFCC1Q8IZS5 231 aa13.46□□□□□ -0.25
TCOF1-214ENST00000515035 PCSK9Q8NBP7 692 aaKnown RBP13.46□□□□□ -0.25
TCOF1-214ENST00000515035 ELMO3Q96BJ8 720 aa13.46□□□□□ -0.25
TCOF1-214ENST00000515035 CITED4Q96RK1 184 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms