RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 FAM71BQ8TC56 605 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 NETO1Q8TDF5 533 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 PIGKQ92643 395 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 TCEAL3Q969E4 200 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 HSPA12BQ96MM6 686 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 CHP1Q99653 195 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 NCAPGQ9BPX3 1015 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 GPR174Q9BXC1 333 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 CEP44Q9C0F1 390 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 MUC3BQ9H195 1237 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 NEUROG2Q9H2A3 272 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 LRRC19Q9H756 370 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 SLC25A13Q9UJS0 675 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 SARDHQ9UL12 918 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 FZD4Q9ULV1 537 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 RALGAPA1Q6GYQ0 2036 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 FGF10O15520 208 aaPredicted RBP9.92□□□□□ -0.82
RNF4-221ENST00000513643 KDELR3O43731 214 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 ADH1BP00325 375 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 DNTTP04053 509 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 IGHV4-34P06331 123 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 SERPINF2P08697 491 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 ACADMP11310 421 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 TCF4P15884 667 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 GOT1P17174 413 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 FECHP22830 423 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 IL4RP24394 825 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 EPHB2P29323 1055 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 ID4P47928 161 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 NUMBP49757 651 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 ARSEP51690 589 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 ZNF135P52742 658 aaPredicted RBP9.92□□□□□ -0.82
RNF4-221ENST00000513643 METAP1P53582 386 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 ADKP55263 362 aaKnown RBP9.92□□□□□ -0.82
RNF4-221ENST00000513643 GFPT1Q06210 699 aaPredicted RBP9.92□□□□□ -0.82
RNF4-221ENST00000513643 DPYSQ14117 519 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 PIGHQ14442 188 aaPredicted RBP9.92□□□□□ -0.82
RNF4-221ENST00000513643 DPYSL2Q16555 572 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 DUOXA1Q1HG43 343 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 BOLA3Q53S33 107 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 INO80DQ53TQ3 878 aaPredicted RBP9.92□□□□□ -0.82
RNF4-221ENST00000513643 CCDC122Q5T0U0 273 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 TXNRD3NBQ6F5E7 133 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 RETSATQ6NUM9 610 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 LINGO4Q6UY18 593 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 Q6ZVU0 165 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 TC2NQ8N9U0 490 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 KCTD15Q96SI1 283 aaPredicted RBP9.92□□□□□ -0.82
RNF4-221ENST00000513643 EPAS1Q99814 870 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 RTKNQ9BST9 563 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.92□□□□□ -0.82
RNF4-221ENST00000513643 SNRNP25Q9BV90 132 aaKnown RBP9.92□□□□□ -0.82
RNF4-221ENST00000513643 BTBD1Q9H0C5 482 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 C6orf106Q9H6K1 298 aaPredicted RBP9.92□□□□□ -0.82
RNF4-221ENST00000513643 EBF2Q9HAK2 575 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 ATP13A1Q9HD20 1204 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 FBXL12Q9NXK8 326 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 DNAI1Q9UI46 699 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 AP4E1Q9UPM8 1137 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.92□□□□□ -0.82
RNF4-221ENST00000513643 ACTL7AQ9Y615 435 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 SLCO1B1Q9Y6L6 691 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 WASF2Q9Y6W5 498 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 SPEGQ15772 3267 aa9.92□□□□□ -0.82
RNF4-221ENST00000513643 ASCC3Q8N3C0 2202 aaKnown RBP9.92□□□□□ -0.82
RNF4-221ENST00000513643 PCNX2A6NKB5 2137 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.91□□□□□ -0.82
RNF4-221ENST00000513643 CBX4O00257 560 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 KHNYNO15037 678 aaKnown RBP9.91□□□□□ -0.82
RNF4-221ENST00000513643 SLC7A4O43246 635 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 LATO43561 262 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 RAMP2O60895 175 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 RNASEH1O60930 286 aaKnown RBP9.91□□□□□ -0.82
RNF4-221ENST00000513643 NDUFS2O75306 463 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 GJB3O75712 270 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 RNF8O76064 485 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 MTA2O94776 668 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 LCA5LO95447 670 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 SEMA4FO95754 770 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 MAOBP27338 520 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 CHRNA3P32297 505 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 CCR5P51681 352 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 NDST2P52849 883 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 TAS2R38P59533 333 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 BNC1Q01954 994 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 SLC25A11Q02978 314 aaKnown RBP9.91□□□□□ -0.82
RNF4-221ENST00000513643 SFSWAPQ12872 951 aaKnown RBP9.91□□□□□ -0.82
RNF4-221ENST00000513643 SERINC3Q13530 473 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 POLD3Q15054 466 aaPredicted RBP9.91□□□□□ -0.82
RNF4-221ENST00000513643 PARP15Q460N3 678 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 TTC31Q49AM3 519 aaPredicted RBP9.91□□□□□ -0.82
RNF4-221ENST00000513643 TRIM61Q5EBN2 209 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 WDR45BQ5MNZ6 344 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 STPG1Q5TH74 334 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 AGBL4Q5VU57 503 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 DCAF12L1Q5VU92 463 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 RWDD4Q6NW29 188 aaKnown RBP9.91□□□□□ -0.82
RNF4-221ENST00000513643 C22orf39Q6P5X5 142 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 DPY19L3Q6ZPD9 716 aa9.91□□□□□ -0.82
RNF4-221ENST00000513643 RFX8Q6ZV50 586 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms