RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 CDKN2BP42772 138 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 MARCKSL1P49006 195 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 PEX5P50542 639 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 COPS2P61201 443 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 SATB1Q01826 763 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 SERINC3Q13530 473 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 PAFAH1B3Q15102 231 aaKnown RBP12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 CRY1Q16526 586 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 FNDC3BQ53EP0 1204 aaKnown RBP12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 RETSATQ6NUM9 610 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 MFSD7Q6UXD7 560 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 SERPINA13PQ6UXR4 307 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 ARHGAP12Q8IWW6 846 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 CAMKK1Q8N5S9 505 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 NPWQ8N729 165 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 HMCESQ96FZ2 354 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 RBM41Q96IZ5 413 aaKnown RBP12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 SLC39A8Q9C0K1 460 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 PRMT8Q9NR22 394 aaPredicted RBP12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 C2orf42Q9NWW7 574 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 SUN2Q9UH99 717 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 SLCO3A1Q9UIG8 710 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 FBXO4Q9UKT5 387 aa12.17□□□□□ -0.46
PDLIM5-208ENST00000504489 CACNA1HO95180 2353 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 PI4KAP42356 2102 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 A0A1W2PQF6 199 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 TARSL2A2RTX5 802 aaKnown RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 K7ESF4 209 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 CBX4O00257 560 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 ATP9BO43861 1147 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 FTCDO95954 541 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 GLDCP23378 1020 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 HOXA6P31267 233 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 WASP42768 502 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 NUMBP49757 651 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 STK19P49842 368 aaPredicted RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 PAPOLAP51003 745 aaKnown RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 DGKEP52429 567 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 RWDD2BP57060 319 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 GEMIN4P57678 1058 aaKnown RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 ARF5P84085 180 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 CAMK2GQ13555 558 aaPredicted RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 HNRNPA1L2Q32P51 320 aaKnown RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 TFDP3Q5H9I0 405 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 NCBP2-AS2Q69YL0 99 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 SPOCD1Q6ZMY3 1216 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 MAML2Q8IZL2 1156 aaPredicted RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 SH2D3CQ8N5H7 860 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 PQLC3Q8N755 202 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 UBL4BQ8N7F7 174 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 TRIM58Q8NG06 486 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 HES6Q96HZ4 224 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 CELF6Q96J87 481 aaKnown RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 RPL10LQ96L21 214 aaKnown RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 ALS2CR12Q96Q35 445 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 PRRX2Q99811 253 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 MAK16Q9BXY0 300 aaKnown RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 CD248Q9HCU0 757 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 POLMQ9NP87 494 aaPredicted RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 POLR3BQ9NW08 1133 aaPredicted RBP12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 SLC8A2Q9UPR5 921 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 EFR3BQ9Y2G0 817 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 MFHAS1Q9Y4C4 1052 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 LRRK1Q38SD2 2015 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 WDFY4Q6ZS81 3184 aa12.16□□□□□ -0.46
PDLIM5-208ENST00000504489 TRPM6Q9BX84 2022 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 TTC34A8MYJ7 566 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 DDX3YO15523 660 aaKnown RBP12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 SYNCRIPO60506 623 aaKnown RBP12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 CD160O95971 181 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 MT-CO1P00395 513 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 EPHX1P07099 455 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 SRCP12931 536 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 TDGF1P13385 188 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 HLA-EP13747 358 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 ZFXP17010 805 aaPredicted RBP12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 TFDP2Q14188 446 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 STARD3Q14849 445 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 PPP2R5EQ16537 467 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 SLC9A4Q6AI14 798 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 METTL3Q86U44 580 aaKnown RBP12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 LRRC49Q8IUZ0 686 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 ATP11CQ8NB49 1132 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 FRS2Q8WU20 508 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 CASKIN2Q8WXE0 1202 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 ALG3Q92685 438 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 KCNH6Q9H252 994 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 FBRSQ9HAH7 460 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 PYCARDQ9ULZ3 195 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 RAD54BQ9Y620 910 aa12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 TNRC6BQ9UPQ9 1833 aaKnown RBP12.15□□□□□ -0.46
PDLIM5-208ENST00000504489 GON4LQ3T8J9 2241 aa12.14□□□□□ -0.47
PDLIM5-208ENST00000504489 hCG_1818297A0A087WSY0 165 aa12.14□□□□□ -0.47
PDLIM5-208ENST00000504489 CCDC163A0A0D9SF12 145 aa12.14□□□□□ -0.47
PDLIM5-208ENST00000504489 EDDM13A0A1B0GTR0 161 aa12.14□□□□□ -0.47
PDLIM5-208ENST00000504489 GOLGA6L9A6NEM1 432 aa12.14□□□□□ -0.47
PDLIM5-208ENST00000504489 DFFAO00273 331 aa12.14□□□□□ -0.47
PDLIM5-208ENST00000504489 APOL1O14791 398 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms