RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 SMAD6O43541 496 aaKnown RBP12.14□□□□□ -0.47
CUX1-210ENST00000497815 BNIP3LO60238 219 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 MAFKO60675 156 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 PRAMEF11O60813 436 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 EPHX1P07099 455 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 SRPRAP08240 638 aaKnown RBP12.14□□□□□ -0.47
CUX1-210ENST00000497815 CHRM1P11229 460 aaPredicted RBP12.14□□□□□ -0.47
CUX1-210ENST00000497815 SRCP12931 536 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 HNRNPLP14866 589 aaKnown RBP eCLIP12.14□□□□□ -0.472e-14■■■■■ 48.8
CUX1-210ENST00000497815 NTSR1P30989 418 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 CASQ1P31415 396 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 NNMTP40261 264 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 GARSP41250 739 aaKnown RBP12.14□□□□□ -0.47
CUX1-210ENST00000497815 SERPINH1P50454 418 aaKnown RBP12.14□□□□□ -0.47
CUX1-210ENST00000497815 ETF1P62495 437 aaKnown RBP12.14□□□□□ -0.47
CUX1-210ENST00000497815 IL10RBQ08334 325 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 MTAPQ13126 283 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 GAS6Q14393 721 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 TRMT11Q7Z4G4 463 aaKnown RBP12.14□□□□□ -0.47
CUX1-210ENST00000497815 ZC3H18Q86VM9 953 aaKnown RBP12.14□□□□□ -0.47
CUX1-210ENST00000497815 SLC13A5Q86YT5 568 aaPredicted RBP12.14□□□□□ -0.47
CUX1-210ENST00000497815 FBXL6Q8N531 539 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 SH2D3CQ8N5H7 860 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 TMEM105Q8N8V8 129 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 COG1Q8WTW3 980 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 MYO19Q96H55 970 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 MS4A14Q96JA4 679 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 OSBPL9Q96SU4 736 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 LGMNQ99538 433 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 C2orf42Q9NWW7 574 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 UBA2Q9UBT2 640 aaPredicted RBP12.14□□□□□ -0.47
CUX1-210ENST00000497815 EFR3BQ9Y2G0 817 aa12.14□□□□□ -0.47
CUX1-210ENST00000497815 FCF1Q9Y324 198 aaKnown RBP12.14□□□□□ -0.47
CUX1-210ENST00000497815 ZSCAN5CA6NGD5 496 aaPredicted RBP12.13□□□□□ -0.47
CUX1-210ENST00000497815 APOC4-APOC2K7ER74 178 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 PPP1R12AO14974 1030 aaPredicted RBP12.13□□□□□ -0.47
CUX1-210ENST00000497815 ZNF185O15231 689 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 ADAM23O75077 832 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 ATG13O75143 517 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 APOC2P02655 101 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 FGGP02679 453 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 HOXB2P14652 356 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 VAV1P15498 845 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 MX2P20592 715 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 RPS9P46781 194 aaKnown RBP12.13□□□□□ -0.47
CUX1-210ENST00000497815 NR2C2P49116 596 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 CLCN5P51795 746 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 GEMIN4P57678 1058 aaKnown RBP12.13□□□□□ -0.47
CUX1-210ENST00000497815 OTUD4Q01804 1114 aaKnown RBP12.13□□□□□ -0.47
CUX1-210ENST00000497815 AP1B1Q10567 949 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 PDK1Q15118 436 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 E2F5Q15329 346 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 DLG2Q15700 870 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 LONRF2Q1L5Z9 754 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 EOGTQ5NDL2 527 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 FAM182AQ5T1J6 154 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 NYAP1Q6ZVC0 841 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 Q6ZVU0 165 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 ZSCAN30Q86W11 494 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 ACTL9Q8TC94 416 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 KCNV2Q8TDN2 545 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 NSMCE1Q8WV22 266 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 PBKQ96KB5 322 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 OLFM3Q96PB7 478 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 TNKS2Q9H2K2 1166 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 CHRDQ9H2X0 955 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 TMEM245Q9H330 911 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 PDFQ9HBH1 243 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 C11orf16Q9NQ32 467 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 SPATA6Q9NWH7 488 aaPredicted RBP12.13□□□□□ -0.47
CUX1-210ENST00000497815 SMARCAL1Q9NZC9 954 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 SEPT10Q9P0V9 454 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 DLGAP2Q9P1A6 1054 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 MMP17Q9ULZ9 603 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 SLC8A2Q9UPR5 921 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 HS3ST2Q9Y278 367 aa12.13□□□□□ -0.47
CUX1-210ENST00000497815 R3HDM2Q9Y2K5 976 aaKnown RBP12.13□□□□□ -0.47
CUX1-210ENST00000497815 CHURC1-FNTBB4DL54 471 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 H7C0C1 242 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 NPC1O15118 1278 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 ATP9BO43861 1147 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 SYNCRIPO60506 623 aaKnown RBP12.12□□□□□ -0.47
CUX1-210ENST00000497815 TMCC1O94876 653 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 CD160O95971 181 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 COL9A1P20849 921 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 ATP5OP48047 213 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 EIF3EP60228 445 aaKnown RBP12.12□□□□□ -0.47
CUX1-210ENST00000497815 SLC20A2Q08357 652 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 SLC10A7Q0GE19 358 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 KLF1Q13351 362 aaPredicted RBP12.12□□□□□ -0.47
CUX1-210ENST00000497815 STARD3Q14849 445 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 NOMO1Q15155 1222 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 CYTH1Q15438 398 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 TIGD7Q6NT04 549 aaPredicted RBP12.12□□□□□ -0.47
CUX1-210ENST00000497815 KIAA1211LQ6NV74 962 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 C22orf39Q6P5X5 142 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 BZW1Q7L1Q6 419 aaKnown RBP12.12□□□□□ -0.47
CUX1-210ENST00000497815 BMP8AQ7Z5Y6 402 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 CCDC13Q8IYE1 715 aa12.12□□□□□ -0.47
CUX1-210ENST00000497815 TFB1MQ8WVM0 346 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms