RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 OSBPL7Q9BZF2 842 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 ACSS3Q9H6R3 686 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 DYRK4Q9NR20 520 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 MPP6Q9NZW5 540 aa8.53□□□□□ -1.04
USP54-215ENST00000497106 E2F8A0AVK6 867 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 F8W810 466 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 TCEA3O75764 348 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 APOA4P06727 396 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 TAC1P20366 129 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 SERPINH1P50454 418 aaKnown RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 CACNA2D1P54289 1103 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 SNRPD1P62314 119 aaKnown RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 RAB44Q7Z6P3 723 aaPredicted RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 ARL14EPQ8N8R7 260 aaPredicted RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 TSEN2Q8NCE0 465 aaKnown RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 PTPRN2Q92932 1015 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 TSSK1BQ9BXA7 367 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 ZFP37Q9Y6Q3 630 aaPredicted RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 FAM47DPA6NHR8 397 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 COCHO43405 550 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 TGM5O43548 720 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 CNPP09543 421 aaKnown RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 PCSK7Q16549 785 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 CCDC142Q17RM4 750 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 GKAP1Q5VSY0 366 aaPredicted RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 TDRPQ86YL5 185 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 ZNF567Q8N184 647 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 ACDQ96AP0 544 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 GRAMD1AQ96CP6 724 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 ASIC4Q96FT7 647 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 SLC39A8Q9C0K1 460 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 PKP3Q9Y446 797 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 SRRM3A6NNA2 597 aaPredicted RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 F5H423 210 aaPredicted RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 POLR2EP19388 210 aaKnown RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 ADRA1DP25100 572 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 CFAP157Q5JU67 520 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 TAS1R1Q7RTX1 841 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 MRPL43Q8N983 215 aaKnown RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 PDCD6IPQ8WUM4 868 aaKnown RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 AUTS2Q8WXX7 1259 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 CLP1Q92989 425 aaKnown RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 FATE1Q969F0 183 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 SLC39A13Q96H72 371 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 OLFM3Q96PB7 478 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 PFDN4Q9NQP4 134 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 ADAM21Q9UKJ8 722 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 ASLP04424 464 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 TFE3P19532 575 aaPredicted RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 MGAT1P26572 445 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 HOXC13P31276 330 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 GP5P40197 560 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 SERPINB8P50452 374 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 CSE1LP55060 971 aaKnown RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 AP1S1P61966 158 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 KCNJ11Q14654 390 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 TRNP1Q6NT89 227 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 ANKS1BQ7Z6G8 1248 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 CPA6Q8N4T0 437 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 SLC25A41Q8N5S1 370 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 CELF5Q8N6W0 485 aaKnown RBP8.52□□□□□ -1.05
USP54-215ENST00000497106 SCYL1Q96KG9 808 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 ZNF446Q9NWS9 450 aa8.52□□□□□ -1.05
USP54-215ENST00000497106 SPATA31D3P0C874 917 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 TYK2P29597 1187 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 SERPINA4P29622 427 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 MDH1P40925 334 aaKnown RBP8.51□□□□□ -1.05
USP54-215ENST00000497106 USP46P62068 366 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 ATAT1Q5SQI0 421 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 HP1BP3Q5SSJ5 553 aaPredicted RBP8.51□□□□□ -1.05
USP54-215ENST00000497106 SPATA31D4Q6ZUB0 917 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 OR2W6PQ8NHA6 318 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 MGARPQ8TDB4 240 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 HMCESQ96FZ2 354 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 SH3GL2Q99962 352 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 IRAK3Q9Y616 596 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 DRGXA6NNA5 263 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 SASH3O75995 380 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 POLD2P49005 469 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 POLR2LP62875 67 aaKnown RBP8.51□□□□□ -1.05
USP54-215ENST00000497106 RASA2Q15283 850 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 SLC14A2Q15849 920 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 RASIP1Q5U651 963 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 OR6P1Q8NGX9 317 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 TTC17Q96AE7 1141 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 AGO1Q9UL18 857 aaKnown RBP8.51□□□□□ -1.05
USP54-215ENST00000497106 SLC30A1Q9Y6M5 507 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 TM9SF1O15321 606 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 STX7O15400 261 aaKnown RBP8.51□□□□□ -1.05
USP54-215ENST00000497106 IGLV3-25P01717 112 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 S100BP04271 92 aaPredicted RBP8.51□□□□□ -1.05
USP54-215ENST00000497106 ZDHHC11BP0C7U3 371 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 ATF6P18850 670 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 SLC7A9P82251 487 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 GAD2Q05329 585 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 FASTKD1Q53R41 847 aaKnown RBP8.51□□□□□ -1.05
USP54-215ENST00000497106 ARMC12Q5T9G4 340 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 SDE2Q6IQ49 451 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 CCDC121Q6ZUS5 278 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms