RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 TMEM8BA6NDV4 472 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 C2CD4BA6NLJ0 364 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 K7ERQ8 282 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 CBX4O00257 560 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 PLK4O00444 970 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 SMAD6O43541 496 aaKnown RBP13.04□□□□□ -0.32
PTPRF-214ENST00000496043 LATO43561 262 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 PLRG1O43660 514 aaKnown RBP13.04□□□□□ -0.32
PTPRF-214ENST00000496043 WNT1P04628 370 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 CALB1P05937 261 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 RRM1P23921 792 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 PTPN9P43378 593 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 RECQLP46063 649 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-214ENST00000496043 METAP1P53582 386 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 PTP4A2Q12974 167 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 NCAPHQ15003 741 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 CDO1Q16878 200 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 CLEC16AQ2KHT3 1053 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 C15orf59Q2T9L4 293 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-214ENST00000496043 POM121L1PQ3SYA9 428 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 ARTNQ5T4W7 220 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 STRADAQ7RTN6 431 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 SLCO6A1Q86UG4 719 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 PHF13Q86YI8 300 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-214ENST00000496043 PNPLA1Q8N8W4 532 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 KDF1Q8NAX2 398 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-214ENST00000496043 OR7D4Q8NG98 312 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 OR2A12Q8NGT7 310 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 JOSD2Q8TAC2 188 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 CENPIQ92674 756 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-214ENST00000496043 ELF4Q99607 663 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-214ENST00000496043 AGPAT1Q99943 283 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 SELENOOQ9BVL4 669 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 DYRK4Q9NR20 520 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 SEPT11Q9NVA2 429 aaKnown RBP13.04□□□□□ -0.32
PTPRF-214ENST00000496043 KLK13Q9UKR3 277 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 DMTF1Q9Y222 760 aa13.04□□□□□ -0.32
PTPRF-214ENST00000496043 A0A1B0GTQ1 180 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 A0A1W2PR77 199 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 SIGLEC16A6NMB1 481 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 SMTNL1A8MU46 457 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 TLR4O00206 839 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 KPNA3O00505 521 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-214ENST00000496043 WNT9AO14904 365 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 MAGEC1O60732 1142 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 PRNPP04156 253 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 RFC1P35251 1148 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-214ENST00000496043 ETFBP38117 255 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 GRK6P43250 576 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 NRG1Q02297 640 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-214ENST00000496043 GNA12Q03113 381 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 TYRO3Q06418 890 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 STAT4Q14765 748 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 INAVAQ3KP66 663 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 ARSIQ5FYB1 569 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 PRAMEF14Q5SWL7 426 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 AGBL4Q5VU57 503 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 NAPEPLDQ6IQ20 393 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 RWDD4Q6NW29 188 aaKnown RBP13.03□□□□□ -0.32
PTPRF-214ENST00000496043 NEK5Q6P3R8 708 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 WDR59Q6PJI9 974 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 LINGO4Q6UY18 593 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 TRIM69Q86WT6 500 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 DRC7Q8IY82 874 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 MFSD2AQ8NA29 543 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 BAHD1Q8TBE0 780 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-214ENST00000496043 GATA6Q92908 595 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 PREBQ9HCU5 417 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 ATP13A1Q9HD20 1204 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 GDF3Q9NR23 364 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 ARHGAP20Q9P2F6 1191 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 KNL1Q8NG31 2342 aa13.03□□□□□ -0.32
PTPRF-214ENST00000496043 ANKRD62A6NC57 917 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 YKT6O15498 198 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 TNFSF14O43557 240 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 ZMPSTE24O75844 475 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 GJB6O95452 261 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 ITGAVP06756 1048 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 CTSLP07711 333 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 PLEKP08567 350 aaPredicted RBP13.02□□□□□ -0.33
PTPRF-214ENST00000496043 FERP16591 822 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 RHOQP17081 205 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 TNFAIP3P21580 790 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 GPD1P21695 349 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 GLDCP23378 1020 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 MAT2AP31153 395 aaKnown RBP13.02□□□□□ -0.33
PTPRF-214ENST00000496043 DNA2P51530 1060 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 GSCP56915 257 aaPredicted RBP13.02□□□□□ -0.33
PTPRF-214ENST00000496043 PPP2CBP62714 309 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 PPP2CAP67775 309 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 C1QBPQ07021 282 aaKnown RBP13.02□□□□□ -0.33
PTPRF-214ENST00000496043 RAB6CQ53S08 254 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 APTXQ7Z2E3 356 aaKnown RBP13.02□□□□□ -0.33
PTPRF-214ENST00000496043 IQCHQ86VS3 1027 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 AOPEPQ8N6M6 819 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 CHST14Q8NCH0 376 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 C3orf20Q8ND61 904 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 FAM172AQ8WUF8 416 aa13.02□□□□□ -0.33
PTPRF-214ENST00000496043 TMEM121BQ9BXQ6 578 aaPredicted RBP13.02□□□□□ -0.33
PTPRF-214ENST00000496043 CEP44Q9C0F1 390 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms