RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 ASNSD1Q9NWL6 643 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 PPM1HQ9ULR3 514 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 OR51B4Q9Y5P0 310 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 RP1P56715 2156 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 EIF4E1BA6NMX2 242 aaKnown RBP12.96□□□□□ -0.33
SKA1-205ENST00000494518 I6L893 689 aaPredicted RBP12.96□□□□□ -0.33
SKA1-205ENST00000494518 TRIM38O00635 465 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 MCF2LO15068 1137 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 FFAR2O15552 330 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 SLC7A4O43246 635 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 SMAD6O43541 496 aaKnown RBP12.96□□□□□ -0.33
SKA1-205ENST00000494518 SIGLEC6O43699 453 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 PRB1P04280 392 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 THEGLP0DJG4 465 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 MYF5P13349 255 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 GLDCP23378 1020 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 PON1P27169 355 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 MTIF2P46199 727 aaKnown RBP12.96□□□□□ -0.33
SKA1-205ENST00000494518 SLC6A3Q01959 620 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 PIP5KL1Q5T9C9 394 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 SLC47A2Q86VL8 602 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 TRIM69Q86WT6 500 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 GRIN3AQ8TCU5 1115 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 KLHDC7BQ96G42 594 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 NOX5Q96PH1 765 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 TKTL2Q9H0I9 626 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 TNKS2Q9H2K2 1166 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 ERVMER34-1Q9H9K5 563 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 SIX2Q9NPC8 291 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 UCKL1Q9NWZ5 548 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 MPP6Q9NZW5 540 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 VPS51Q9UID3 782 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 PCDHGC3Q9UN70 934 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 DMTF1Q9Y222 760 aa12.96□□□□□ -0.33
SKA1-205ENST00000494518 SETXQ7Z333 2677 aaKnown RBP12.96□□□□□ -0.34
SKA1-205ENST00000494518 A0A0D9SEW6 157 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 PRAMEF26H0Y7S4 382 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 FOXN3O00409 490 aaPredicted RBP12.95□□□□□ -0.34
SKA1-205ENST00000494518 CLDN11O75508 207 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 C1SP09871 688 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 CKMT2P17540 419 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 CHRNA3P32297 505 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 NOS2P35228 1153 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 CLCN1P35523 988 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 KRT9P35527 623 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 EIF2S3P41091 472 aaKnown RBP12.95□□□□□ -0.34
SKA1-205ENST00000494518 CDH4P55283 916 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 CLDN2P57739 230 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 DAB2P98082 770 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 INSM1Q01101 510 aaPredicted RBP12.95□□□□□ -0.34
SKA1-205ENST00000494518 PTK2Q05397 1052 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 PROX2Q3B8N5 592 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 C2CD6Q53TS8 623 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 ZNF542PQ5EBM4 170 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 KDM7AQ6ZMT4 941 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 SLC26A9Q7LBE3 791 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 TMC6Q7Z403 805 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 IRF2BP1Q8IU81 584 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 OR7D4Q8NG98 312 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 CALN1Q9BXU9 219 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 KDM4CQ9H3R0 1056 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 PREBQ9HCU5 417 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 RWDD2AQ9UIY3 292 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 DNAJC12Q9UKB3 198 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 TPX2Q9ULW0 747 aaKnown RBP12.95□□□□□ -0.34
SKA1-205ENST00000494518 RAI2Q9Y5P3 530 aa12.95□□□□□ -0.34
SKA1-205ENST00000494518 CFAP46Q8IYW2 2715 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 E9PAM4 449 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 ALOX15BO15296 676 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 BRINP1O60477 761 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 MAGEC1O60732 1142 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 PCDH8O95206 1070 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 KRT83P78385 493 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 DEUP1Q05D60 604 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 HSP90AA4PQ58FG1 418 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 ARSIQ5FYB1 569 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 TAF3Q5VWG9 929 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 SEL1L3Q68CR1 1132 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 IQCHQ86VS3 1027 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 SLC25A45Q8N413 288 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 TMEM145Q8NBT3 493 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 OR13H1Q8NG92 308 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 OR2A12Q8NGT7 310 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 RNF25Q96BH1 459 aaPredicted RBP12.94□□□□□ -0.34
SKA1-205ENST00000494518 FAM81BQ96LP2 452 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 PPP1R9BQ96SB3 815 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 TBCBQ99426 244 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 NPY6RQ99463 290 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 SPON2Q9BUD6 331 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 PDCL3Q9H2J4 239 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 WDCPQ9H6R7 721 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 DYRK4Q9NR20 520 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 ARHGEF38Q9NXL2 777 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.94□□□□□ -0.34
SKA1-205ENST00000494518 CLCA2Q9UQC9 943 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 HS3ST2Q9Y278 367 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 TBC1D30Q9Y2I9 924 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 GTF3C3Q9Y5Q9 886 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 CHD5Q8TDI0 1954 aa12.94□□□□□ -0.34
SKA1-205ENST00000494518 GOLGA8SH3BPF8 625 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms