RNA–Protein interactions for RNA: ENST00000494012.1

MACF1-222, Transcript of microtubule-actin crosslinking factor 1, human

TSL 4

Gene MACF1, Length 667 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-222	ENST00000494012	C7	P10643	843 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	COMT	P21964	271 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	GLDC	P23378	1020 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	ACVRL1	P37023	503 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	RECQL	P46063	649 aa	Predicted RBP	10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	ARF5	P84085	180 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	SERINC3	Q13530	473 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	SIM2	Q14190	667 aa	Predicted RBP	10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	DPYSL3	Q14195	570 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	GSE1	Q14687	1217 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	DLG2	Q15700	870 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	TTC31	Q49AM3	519 aa	Predicted RBP	10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	C9orf64	Q5T6V5	341 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	C22orf39	Q6P5X5	142 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	LINGO4	Q6UY18	593 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	PCDH20	Q8N6Y1	951 aa	Known RBP	10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	NPW	Q8N729	165 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	TPCN2	Q8NHX9	752 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	CEP192	Q8TEP8	1941 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	FRS2	Q8WU20	508 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	OR8D1	Q8WZ84	308 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	NUP205	Q92621	2012 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	PTPRN2	Q92932	1015 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	ERLEC1	Q96DZ1	483 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	SIPA1	Q96FS4	1042 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	HMCES	Q96FZ2	354 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	PHOX2B	Q99453	314 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	LACRT	Q9GZZ8	138 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	MKRN2	Q9H000	416 aa	Known RBP	10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	NOL6	Q9H6R4	1146 aa	Known RBP	10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	LRRC19	Q9H756	370 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	KLHL11	Q9NVR0	708 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	SCML1	Q9UN30	329 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	ALG6	Q9Y672	507 aa		10.2	□□□□□ -0.78
MACF1-222	ENST00000494012	MACROD2	A1Z1Q3	448 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	DFFA	O00273	331 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	DCLK1	O15075	740 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	MAP3K13	O43283	966 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	HR	O43593	1189 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	BUB1	O43683	1085 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	KRT86	O43790	486 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	ADH1B	P00325	375 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	MT-CO1	P00395	513 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	LMNA	P02545	664 aa	Known RBP	10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	AMPD1	P23109	780 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	KDELR1	P24390	212 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	OXTR	P30559	389 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	P2RY2	P41231	377 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	ARSE	P51690	589 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	ELF2	Q15723	593 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	INO80D	Q53TQ3	878 aa	Predicted RBP	10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	ANKRD20A8P	Q5CZ79	823 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	AFMID	Q63HM1	303 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	SLC36A4	Q6YBV0	504 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	PRR23B	Q6ZRT6	265 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012		Q6ZVU0	165 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	CACUL1	Q86Y37	369 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	CPNE8	Q86YQ8	564 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	SYCE1	Q8N0S2	351 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	KIAA1524	Q8TCG1	905 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	ISG20	Q96AZ6	181 aa	Known RBP	10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	FAF2	Q96CS3	445 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	CELF6	Q96J87	481 aa	Known RBP	10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	SLC6A17	Q9H1V8	727 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	SP110	Q9HB58	689 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	USP36	Q9P275	1121 aa	Known RBP	10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	SMG5	Q9UPR3	1016 aa	Known RBP	10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	ADGRG1	Q9Y653	693 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	DUSP10	Q9Y6W6	482 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	SHROOM3	Q8TF72	1996 aa		10.19	□□□□□ -0.78
MACF1-222	ENST00000494012	THADA	Q6YHU6	1953 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	CCDC66	A2RUB6	948 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	C1QTNF3-AMACR	E9PGA6	284 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012		K7ERQ8	282 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	MCF2L	O15068	1137 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	SMAD6	O43541	496 aa	Known RBP	10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	BNIP3L	O60238	219 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	PRAMEF11	O60813	436 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	RHOBTB1	O94844	696 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	IL1B	P01584	269 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	IGLV3-19	P01714	112 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	PTMA	P06454	111 aa	Known RBP	10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	CD48	P09326	243 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	TNNT1	P13805	278 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	VAV1	P15498	845 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	C5AR1	P21730	350 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	IL4R	P24394	825 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	PAPOLA	P51003	745 aa	Known RBP	10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	TPMT	P51580	245 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	RPS14	P62263	151 aa	Known RBP	10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	CCZ1B	P86790	482 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	CCZ1	P86791	482 aa	Predicted RBP	10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	IL10RB	Q08334	325 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	SRSF5	Q13243	272 aa	Known RBP	10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	RFTN1	Q14699	578 aa	Predicted RBP	10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	CST6	Q15828	149 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	MAP7D1	Q3KQU3	841 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	ATP13A4	Q4VNC1	1196 aa		10.18	□□□□□ -0.78
MACF1-222	ENST00000494012	SPDYC	Q5MJ68	293 aa		10.18	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms