RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PRKAG3Q9UGI9 489 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 WNK3Q9BYP7 1800 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ALDH2P05091 517 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TGM2P21980 687 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CDH3P22223 829 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 KCNA4P22459 653 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GPR15P49685 360 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FKBP1BP68106 108 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ZNF252P-AS1Q0IIN9 211 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MORF4L2Q15014 288 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PDK1Q15118 436 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CHI3L2Q15782 390 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 C16orf59Q7L2K0 433 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ZBTB46Q86UZ6 589 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ZNF786Q8N393 782 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ATAD3AQ9NVI7 634 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 HCSTQ9UBK5 93 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 STYXL1Q9Y6J8 313 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ATP8B3O60423 1300 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 C1orf232A0A0U1RR37 186 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ARHGEF37A1IGU5 675 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 C3orf70A6NLC5 250 aaPredicted RBP10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NRP1O14786 923 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MFSD11O43934 449 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DAB1O75553 588 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TMEM63AO94886 807 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 VCLP18206 1134 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PPARGP37231 505 aaPredicted RBP10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 LHX1P48742 406 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 HPCAP84074 193 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TWF1Q12792 350 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DUSP4Q13115 394 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ZNF235Q14590 738 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TMC5Q6UXY8 1006 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 BBS12Q6ZW61 710 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NET1Q7Z628 596 aaPredicted RBP10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CACUL1Q86Y37 369 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 HSPBAP1Q96EW2 488 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ING2Q9H160 280 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RBM22Q9NW64 420 aaKnown RBP eCLIP10.93□□□□□ -0.662e-13■■■■■ 57.4
MSH5-SAPCD1-207ENST00000493662 GMEB1Q9Y692 573 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 COL2A1P02458 1487 aaPredicted RBP10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 C2CD4BA6NLJ0 364 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MATN2O00339 956 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ITGB1P05556 798 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GMPRP36959 345 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 HSPA13P48723 471 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NR1H2P55055 460 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RPL10AP62906 217 aaKnown RBP10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FOLH1Q04609 750 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 THOC7Q6I9Y2 204 aaKnown RBP10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TTC33Q6PID6 262 aaPredicted RBP10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CPT1BQ92523 772 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 IFT43Q96FT9 208 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 EBF3Q9H4W6 596 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CYP4F12Q9HCS2 524 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ZC4H2Q9NQZ6 224 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 IARS2Q9NSE4 1012 aaKnown RBP10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GIMAP4Q9NUV9 329 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DAPK2Q9UIK4 370 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 AP4S1Q9Y587 144 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PEX1O43933 1283 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 UGT1A9O60656 530 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SERPINB1P30740 379 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CASP2P42575 452 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DEFB107AQ8IZN7 70 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 AUTS2Q8WXX7 1259 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 WNT8BQ93098 351 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SMARCD1Q96GM5 515 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FAM96AQ9H5X1 160 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PPCSQ9HAB8 311 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 UGT1A7Q9HAW7 530 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 UGT1A10Q9HAW8 530 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 UGT1A8Q9HAW9 530 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CHST12Q9NRB3 414 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ZDHHC18Q9NUE0 388 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TMEM59LQ9UK28 342 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DMTF1Q9Y222 760 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DOCK3Q8IZD9 2030 aa10.93□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SEPT4O43236 478 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DEAF1O75398 565 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TOP3BO95985 862 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CYP3A5P20815 502 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PLK1P53350 603 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ARPC4P59998 168 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MRPS5P82675 430 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CDC16Q13042 620 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NOGQ13253 232 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ITGADQ13349 1161 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 USP10Q14694 798 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MSS51Q4VC12 460 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CLPTM1LQ96KA5 538 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CSPG4P5Q96PW8 444 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PTPRHQ9HD43 1115 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TRNAU1APQ9NX07 287 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DKK3Q9UBP4 350 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 IGKV6-21A0A0C4DH24 114 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CA12O43570 354 aa10.92□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PDK2Q15119 407 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 145.8 ms