RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 TFCP2Q12800 502 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 LMAN2Q12907 356 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 RRP1BQ14684 758 aaKnown RBP4.92□□□□□ -1.62
VPS13A-212ENST00000493341 ATG9BQ674R7 924 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 KIAA0930Q6ICG6 404 aaPredicted RBP4.92□□□□□ -1.62
VPS13A-212ENST00000493341 PLPPR4Q7Z2D5 763 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 CCDC91Q7Z6B0 441 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 FAM160B2Q86V87 743 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 C12orf76Q8N812 135 aaPredicted RBP4.92□□□□□ -1.62
VPS13A-212ENST00000493341 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.92□□□□□ -1.62
VPS13A-212ENST00000493341 CPEB3Q8NE35 698 aaKnown RBP4.92□□□□□ -1.62
VPS13A-212ENST00000493341 RMDN1Q96DB5 314 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 HS6ST2Q96MM7 605 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 SRSF8Q9BRL6 282 aaKnown RBP4.92□□□□□ -1.62
VPS13A-212ENST00000493341 IKZF4Q9H2S9 585 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.92□□□□□ -1.62
VPS13A-212ENST00000493341 FBXL17Q9UF56 701 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 GABRQQ9UN88 632 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 MTMR6Q9Y217 621 aa4.92□□□□□ -1.62
VPS13A-212ENST00000493341 ADGRF5Q8IZF2 1346 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 ADGRA2Q96PE1 1338 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 URADA6NGE7 173 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 UNC119BA6NIH7 251 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 MARCH11A6NNE9 402 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 C17orf100A8MU93 164 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 IFNL4K9M1U5 179 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 CSPG5O95196 566 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 IPO7O95373 1038 aaKnown RBP4.91□□□□□ -1.62
VPS13A-212ENST00000493341 DLDP09622 509 aaKnown RBP4.91□□□□□ -1.62
VPS13A-212ENST00000493341 KRT10P13645 584 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 ATP6V1B1P15313 513 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 GABRB1P18505 474 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 DDX6P26196 483 aaKnown RBP eCLIP4.91□□□□□ -1.62
VPS13A-212ENST00000493341 CAMK2DQ13557 499 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 KCNA10Q16322 511 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 ZSCAN23Q3MJ62 389 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 ARTNQ5T4W7 220 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 SLC30A9Q6PML9 568 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 KIRREL2Q6UWL6 708 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 SERPINA13PQ6UXR4 307 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 Q6ZWC4 215 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 TMEM151BQ8IW70 566 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 LAS2Q8IYD9 372 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 THNSL1Q8IYQ7 743 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 SYT2Q8N9I0 419 aaPredicted RBP4.91□□□□□ -1.62
VPS13A-212ENST00000493341 SCAIQ8N9R8 606 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 TDRD5Q8NAT2 981 aaKnown RBP4.91□□□□□ -1.62
VPS13A-212ENST00000493341 PSPC1Q8WXF1 523 aaKnown RBP4.91□□□□□ -1.62
VPS13A-212ENST00000493341 MMABQ96EY8 250 aaPredicted RBP4.91□□□□□ -1.62
VPS13A-212ENST00000493341 SIPA1Q96FS4 1042 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 GBP5Q96PP8 586 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 SNX18Q96RF0 628 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 NCAPGQ9BPX3 1015 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 ALG8Q9BVK2 526 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 STRA6Q9BX79 667 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 CADM1Q9BY67 442 aaKnown RBP4.91□□□□□ -1.62
VPS13A-212ENST00000493341 GLIS2Q9BZE0 524 aaPredicted RBP4.91□□□□□ -1.62
VPS13A-212ENST00000493341 OPA3Q9H6K4 179 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 NCKIPSDQ9NZQ3 722 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 PPP4R1LQ9P1A2 415 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 HAO1Q9UJM8 370 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 DHDHQ9UQ10 334 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 PKP3Q9Y446 797 aa4.91□□□□□ -1.62
VPS13A-212ENST00000493341 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.9□□□□□ -1.62
VPS13A-212ENST00000493341 GAGE12BA1L429 117 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 GAGE12HA6NDE8 117 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 A8MXE2 369 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 A8MZ25 164 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 H0Y626 953 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 SLC7A4O43246 635 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 CNTN5O94779 1100 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 ATP5BP06576 529 aaKnown RBP4.9□□□□□ -1.62
VPS13A-212ENST00000493341 PRR35P0CG20 571 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 MYBL1P10243 752 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 ENGP17813 658 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 COMTP21964 271 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 CALRP27797 417 aaKnown RBP4.9□□□□□ -1.62
VPS13A-212ENST00000493341 NDUFS1P28331 727 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 LIG4P49917 911 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 ZNF41P51814 821 aaPredicted RBP4.9□□□□□ -1.62
VPS13A-212ENST00000493341 STAT2P52630 851 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 COPB1P53618 953 aaKnown RBP4.9□□□□□ -1.62
VPS13A-212ENST00000493341 RBP5P82980 135 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 PSG6Q00889 435 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 CYP4A11Q02928 519 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 VEPH1Q14D04 833 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 PCLAFQ15004 111 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 BEAN1Q3B7T3 259 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 ARL13AQ5H913 290 aaPredicted RBP4.9□□□□□ -1.62
VPS13A-212ENST00000493341 C9orf152Q5JTZ5 239 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 IL20RBQ6UXL0 311 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 CLEC17AQ6ZS10 378 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 PARS2Q7L3T8 475 aaKnown RBP4.9□□□□□ -1.62
VPS13A-212ENST00000493341 GPAT4Q86UL3 456 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 KBTBD6Q86V97 674 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 KIAA2013Q8IYS2 634 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 CEP57L1Q8IYX8 460 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 CARNMT1Q8N4J0 409 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 IL17RCQ8NAC3 791 aa4.9□□□□□ -1.62
VPS13A-212ENST00000493341 GSDMBQ8TAX9 411 aa4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 112.1 ms