RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 KRT16P08779 473 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 RHOQP17081 205 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 GEMP55040 296 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 TRIP4Q15650 581 aaPredicted RBP21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 PSMD5Q16401 504 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 INSCQ1MX18 579 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 FASTKD1Q53R41 847 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 DENND5AQ6IQ26 1287 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 RNF19BQ6ZMZ0 732 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 CMC1Q7Z7K0 106 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 NPAS4Q8IUM7 802 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 UMODL1-AS1Q8N2C9 162 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 SPPL2BQ8TCT7 592 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 SKA1Q96BD8 255 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 ZNF778Q96MU6 729 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 SEPT5Q99719 369 aaPredicted RBP21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 MCMBPQ9BTE3 642 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 FICDQ9BVA6 458 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 SEZ6LQ9BYH1 1024 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 LRMDAQ9H2I8 198 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 ZNF395Q9H8N7 513 aaPredicted RBP21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 HAO1Q9UJM8 370 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 PITPNM1O00562 1244 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 ADRA1AP35348 466 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 PBX3P40426 434 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 SERPINB8P50452 374 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 TAF10Q12962 218 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 CTC1Q2NKJ3 1217 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 MGAT5BQ3V5L5 792 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 RASIP1Q5U651 963 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 FSTL4Q6MZW2 842 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 ATXN7L3BQ96GX2 97 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 SPATA17Q96L03 361 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 PPP1R2P1Q96PQ5 205 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 ZYG11BQ9C0D3 744 aa21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 TLR8Q9NR97 1041 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 IARS2Q9NSE4 1012 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 PPARGC1AQ9UBK2 798 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-208ENST00000492980 NT5C1B-RDH14C9J2C7 533 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 PROCP04070 461 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 MYL2P10916 166 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 PSEN1P49768 467 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 CSE1LP55060 971 aaKnown RBP21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 MPP3Q13368 585 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 SNCBQ16143 134 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 PCID2Q5JVF3 399 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 MBLAC2Q68D91 279 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 TFAP2DQ7Z6R9 452 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 TMEM173Q86WV6 379 aaPredicted RBP21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 ATP6V0D2Q8N8Y2 350 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 C20orf27Q9GZN8 174 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 OLA1Q9NTK5 396 aaKnown RBP21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 TMEM248Q9NWD8 314 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 SCN5AQ14524 2016 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 IGLV3-10A0A075B6K4 115 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 C2orf71A6NGG8 1288 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 DNAJC6O75061 913 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 FKTNO75072 461 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 CBX6O95503 412 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 PEX11BO96011 259 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 GALTP07902 379 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 HAPLN1P10915 354 aaPredicted RBP21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 GMPRP36959 345 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 NDST2P52849 883 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 RPL10AP62906 217 aaKnown RBP21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 STX3Q13277 289 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 PCLAFQ15004 111 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 ANO4Q32M45 955 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 ALFQ53S48 1182 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 PKN3Q6P5Z2 889 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 ZCCHC23Q6ZST2 131 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 MIB1Q86YT6 1006 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 SUGP1Q8IWZ8 645 aaKnown RBP21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 ZNF296Q8WUU4 475 aaPredicted RBP21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 BTN2A3PQ96KV6 586 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 TMEM237Q96Q45 408 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 TMEM175Q9BSA9 504 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 TMEM216Q9P0N5 145 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 MARCH2Q9P0N8 246 aa21.46■■□□□ 1.03
CCDC88B-208ENST00000492980 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 CCDC78A2IDD5 438 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 HOXA2O43364 376 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 CNTN5O94779 1100 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 FGF3P11487 239 aaPredicted RBP21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 SERPINB3P29508 390 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 ABCG1P45844 678 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 ELAVL2Q12926 359 aaKnown RBP21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 PDPK2PQ6A1A2 396 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 TAS1R1Q7RTX1 841 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 CCDC91Q7Z6B0 441 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 SH3TC2Q8TF17 1288 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 BCL7CQ8WUZ0 217 aaPredicted RBP21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 HMCESQ96FZ2 354 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 MRPL9Q9BYD2 267 aaKnown RBP21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 SAR1AQ9NR31 198 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 KCNK4Q9NYG8 393 aa21.45■■□□□ 1.02
CCDC88B-208ENST00000492980 TBKBP1A7MCY6 615 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 GOLGA8TH3BQL2 631 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 TIMM44O43615 452 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 ATP6V1G2O95670 118 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms