RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 NSMCE1Q8WV22 266 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 ARHGEF2Q92974 986 aaKnown RBP10.53□□□□□ -0.72
SKA1-204ENST00000488454 TTC17Q96AE7 1141 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 ACDQ96AP0 544 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 PBXIP1Q96AQ6 731 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 PBKQ96KB5 322 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 LMLNQ96KR4 655 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 TLR10Q9BXR5 811 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 COL25A1Q9BXS0 654 aaPredicted RBP10.53□□□□□ -0.72
SKA1-204ENST00000488454 OSBPL8Q9BZF1 889 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 FOXQ1Q9C009 403 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 SLC39A8Q9C0K1 460 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 CARD9Q9H257 536 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 ZNF212Q9UDV6 495 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 STARD13Q9Y3M8 1113 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 HEY1Q9Y5J3 304 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 OR51B4Q9Y5P0 310 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 RAD54BQ9Y620 910 aa10.53□□□□□ -0.72
SKA1-204ENST00000488454 hCG_1818297A0A087WSY0 165 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 ZSCAN5CA6NGD5 496 aaPredicted RBP10.52□□□□□ -0.73
SKA1-204ENST00000488454 NPC1O15118 1278 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 KDELR3O43731 214 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 CEP104O60308 925 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 SRPRAP08240 638 aaKnown RBP10.52□□□□□ -0.73
SKA1-204ENST00000488454 CHRNB1P11230 501 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 TGM2P21980 687 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 CASQ1P31415 396 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 PTPN7P35236 360 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 ACVRL1P37023 503 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 NR2C2P49116 596 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 NUMBP49757 651 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 GEMIN4P57678 1058 aaKnown RBP10.52□□□□□ -0.73
SKA1-204ENST00000488454 MESP2Q0VG99 397 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 CCINQ13939 588 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 FNDC3BQ53EP0 1204 aaKnown RBP10.52□□□□□ -0.73
SKA1-204ENST00000488454 C2orf27AQ580R0 203 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 EMC10Q5UCC4 262 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 NCBP2-AS2Q69YL0 99 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 SLC9A4Q6AI14 798 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 CHPFQ8IZ52 775 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 PQLC3Q8N755 202 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 PLD5Q8N7P1 536 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 ZNF513Q8N8E2 541 aaPredicted RBP10.52□□□□□ -0.73
SKA1-204ENST00000488454 ZNF511Q8NB15 262 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 ATP11CQ8NB49 1132 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 CCNYQ8ND76 341 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 PJA1Q8NG27 643 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 CYB5D2Q8WUJ1 264 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 SORCS1Q8WY21 1168 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 P3H4Q92791 437 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 ALG14Q96F25 216 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 HMCESQ96FZ2 354 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 PSMB7Q99436 277 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 NAPGQ99747 312 aaPredicted RBP10.52□□□□□ -0.73
SKA1-204ENST00000488454 ACE2Q9BYF1 805 aaPredicted RBP10.52□□□□□ -0.73
SKA1-204ENST00000488454 LRRC19Q9H756 370 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 SP110Q9HB58 689 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 RBM12Q9NTZ6 932 aaKnown RBP10.52□□□□□ -0.73
SKA1-204ENST00000488454 ETNK2Q9NVF9 386 aa10.52□□□□□ -0.73
SKA1-204ENST00000488454 INTS6Q9UL03 887 aaKnown RBP10.52□□□□□ -0.73
SKA1-204ENST00000488454 MTF2Q9Y483 593 aaPredicted RBP10.52□□□□□ -0.73
SKA1-204ENST00000488454 SHISA7A6NL88 538 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 PPP1R12AO14974 1030 aaPredicted RBP10.51□□□□□ -0.73
SKA1-204ENST00000488454 SNAP91O60641 907 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 TUBB4AP04350 444 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 ATP1A1P05023 1023 aaKnown RBP10.51□□□□□ -0.73
SKA1-204ENST00000488454 HNRNPLP14866 589 aaKnown RBP eCLIP10.51□□□□□ -0.73
SKA1-204ENST00000488454 CXCR5P32302 372 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 MAGEA9P43362 315 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 CLCN5P51795 746 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 ETF1P62495 437 aaKnown RBP10.51□□□□□ -0.73
SKA1-204ENST00000488454 GBE1Q04446 702 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 SERINC3Q13530 473 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 PDK1Q15118 436 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 ACCSLQ4AC99 568 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 HSF5Q4G112 596 aaPredicted RBP10.51□□□□□ -0.73
SKA1-204ENST00000488454 EOGTQ5NDL2 527 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 AFMIDQ63HM1 303 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 TMEM215Q68D42 235 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 TIGD7Q6NT04 549 aaPredicted RBP10.51□□□□□ -0.73
SKA1-204ENST00000488454 AADACL2Q6P093 401 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 SERPINA13PQ6UXR4 307 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 BBS12Q6ZW61 710 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 ZSCAN30Q86W11 494 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 SFTPA1Q8IWL2 248 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 ATPAF2Q8N5M1 289 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 NPWQ8N729 165 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 MAIP1Q8WWC4 291 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 RPL10LQ96L21 214 aaKnown RBP10.51□□□□□ -0.73
SKA1-204ENST00000488454 FERMT1Q9BQL6 677 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 KLC2Q9H0B6 622 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 BRD8Q9H0E9 1235 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 EPHX3Q9H6B9 360 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 NOL6Q9H6R4 1146 aaKnown RBP10.51□□□□□ -0.73
SKA1-204ENST00000488454 SUN2Q9UH99 717 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 IPO11Q9UI26 975 aaKnown RBP10.51□□□□□ -0.73
SKA1-204ENST00000488454 VPS51Q9UID3 782 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 ERVW-1Q9UQF0 538 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 MFHAS1Q9Y4C4 1052 aa10.51□□□□□ -0.73
SKA1-204ENST00000488454 CXorf51AA0A1B0GTR3 108 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms