RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 DPP10Q8N608 796 aa3.52□□□□□ -1.85
VPS50-216ENST00000484954 NEXN-AS1Q8NBZ9 246 aa3.52□□□□□ -1.85
VPS50-216ENST00000484954 KLHL31Q9H511 634 aa3.52□□□□□ -1.85
VPS50-216ENST00000484954 HIF1ANQ9NWT6 349 aa3.52□□□□□ -1.85
VPS50-216ENST00000484954 DACT1Q9NYF0 836 aa3.52□□□□□ -1.85
VPS50-216ENST00000484954 GRHPRQ9UBQ7 328 aa3.52□□□□□ -1.85
VPS50-216ENST00000484954 KLQ9UEF7 1012 aa3.52□□□□□ -1.85
VPS50-216ENST00000484954 IFITM10A6NMD0 228 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 LIASO43766 372 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 HOXC6P09630 235 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 FCGR2AP12318 317 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 CHN1P15882 459 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 AVPR1AP37288 418 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 HTR3AP46098 478 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 PCP4P48539 62 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 ENTPD1P49961 510 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 PRKAA2P54646 552 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 ZP1P60852 638 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 ALKBH1Q13686 389 aaKnown RBP3.51□□□□□ -1.85
VPS50-216ENST00000484954 C5orf22Q49AR2 442 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 PRAMEF19Q5SWL8 479 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 ATG9BQ674R7 924 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 FAM83HQ6ZRV2 1179 aaPredicted RBP3.51□□□□□ -1.85
VPS50-216ENST00000484954 Q6ZTC4 211 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 SYT13Q7L8C5 426 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 LMO3Q8TAP4 145 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 CEP76Q8TAP6 659 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 CSGALNACT1Q8TDX6 532 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 CPT1BQ92523 772 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 PHF21BQ96EK2 531 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 FAM84BQ96KN1 310 aaPredicted RBP3.51□□□□□ -1.85
VPS50-216ENST00000484954 TRAPPC9Q96Q05 1148 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 PIGSQ96S52 555 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 MEIS3Q99687 375 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 SELENONQ9NZV5 590 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 MDFICQ9P1T7 246 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 UPB1Q9UBR1 384 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 CDH22Q9UJ99 828 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 FZD10Q9ULW2 581 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 RAI2Q9Y5P3 530 aa3.51□□□□□ -1.85
VPS50-216ENST00000484954 TARSL2A2RTX5 802 aaKnown RBP3.5□□□□□ -1.85
VPS50-216ENST00000484954 DDTLA6NHG4 134 aaPredicted RBP3.5□□□□□ -1.85
VPS50-216ENST00000484954 H0Y3Z8 333 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 SYN3O14994 580 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 TMCC1O94876 653 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 CLDN7O95471 211 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 DDAH2O95865 285 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 CSF1P09603 554 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 TGFB3P10600 412 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 FGF3P11487 239 aaPredicted RBP3.5□□□□□ -1.85
VPS50-216ENST00000484954 PRKCHP24723 683 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 GSTM2P28161 218 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 ICA1Q05084 483 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 HYAL1Q12794 435 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 NFATC4Q14934 902 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 TUBB8Q3ZCM7 444 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 DNTTIP2Q5QJE6 756 aaKnown RBP3.5□□□□□ -1.85
VPS50-216ENST00000484954 OTUD1Q5VV17 481 aaPredicted RBP3.5□□□□□ -1.85
VPS50-216ENST00000484954 CAPRIN2Q6IMN6 1127 aaKnown RBP3.5□□□□□ -1.85
VPS50-216ENST00000484954 CAMK1DQ8IU85 385 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 CCDC117Q8IWD4 279 aaPredicted RBP3.5□□□□□ -1.85
VPS50-216ENST00000484954 CACNA2D3Q8IZS8 1091 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 FAM185AQ8N0U4 392 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 VPS37AQ8NEZ2 397 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 OTUD7AQ8TE49 926 aaPredicted RBP3.5□□□□□ -1.85
VPS50-216ENST00000484954 POF1BQ8WVV4 589 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 CATSPERBQ9H7T0 1116 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 RMI1Q9H9A7 625 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 PLEKHA2Q9HB19 425 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 CD93Q9NPY3 652 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 TLR8Q9NR97 1041 aaKnown RBP3.5□□□□□ -1.85
VPS50-216ENST00000484954 DAAM1Q9Y4D1 1078 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 SLC4A4Q9Y6R1 1079 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 DOCK7Q96N67 2140 aa3.5□□□□□ -1.85
VPS50-216ENST00000484954 MS4A18H0YCH9 400 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 IPO5O00410 1097 aaKnown RBP3.49□□□□□ -1.85
VPS50-216ENST00000484954 HSPB6O14558 160 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 PLIN1O60240 522 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 PPP1R3DO95685 299 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 CSTBP04080 98 aaKnown RBP3.49□□□□□ -1.85
VPS50-216ENST00000484954 ARSAP15289 507 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 GNLYP22749 145 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 HOXD3P31249 432 aaPredicted RBP3.49□□□□□ -1.85
VPS50-216ENST00000484954 OAZ1P54368 228 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 TRAF3Q13114 568 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 TIGD6Q17RP2 521 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 TBC1D9BQ66K14 1250 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 NADSYN1Q6IA69 706 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 TANGO2Q6ICL3 276 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 HEPHL1Q6MZM0 1159 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 JMJD6Q6NYC1 403 aaPredicted RBP3.49□□□□□ -1.85
VPS50-216ENST00000484954 C1orf228Q6PIY5 440 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 PRSS57Q6UWY2 283 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.49□□□□□ -1.85
VPS50-216ENST00000484954 BRSK2Q8IWQ3 736 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 PTGR2Q8N8N7 351 aaPredicted RBP3.49□□□□□ -1.85
VPS50-216ENST00000484954 SCAIQ8N9R8 606 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 FAR1Q8WVX9 515 aa3.49□□□□□ -1.85
VPS50-216ENST00000484954 DDX23Q9BUQ8 820 aaKnown RBP3.49□□□□□ -1.85
VPS50-216ENST00000484954 SEZ6LQ9BYH1 1024 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms