RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	CLDND1	Q9NY35	253 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	TBC1D14	Q9P2M4	693 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	HPCAL4	Q9UM19	191 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	TTLL3	Q9Y4R7	772 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	ACTL7A	Q9Y615	435 aa		11.44	□□□□□ -0.58
APTX-223	ENST00000479656	HELZ	P42694	1942 aa	Known RBP	11.43	□□□□□ -0.58
APTX-223	ENST00000479656	TBX10	O75333	385 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	AVIL	O75366	819 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	BANF1	O75531	89 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	HLA-DQB2	P05538	268 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	WEE1	P30291	646 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	ETFB	P38117	255 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	GRIA1	P42261	906 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	OXCT1	P55809	520 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	ARL4C	P56559	192 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	PDIA2	Q13087	525 aa	Known RBP	11.43	□□□□□ -0.58
APTX-223	ENST00000479656	SPARCL1	Q14515	664 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	HIF1A	Q16665	826 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	MSS51	Q4VC12	460 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	UBAP2	Q5T6F2	1119 aa	Known RBP	11.43	□□□□□ -0.58
APTX-223	ENST00000479656	CES5A	Q6NT32	575 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	CENPU	Q71F23	418 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	SMARCD2	Q92925	531 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	IRF7	Q92985	503 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	FATE1	Q969F0	183 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	C9orf72	Q96LT7	481 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	FAM161B	Q96MY7	647 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	FEM1A	Q9BSK4	669 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	CDC42EP4	Q9H3Q1	356 aa	Known RBP	11.43	□□□□□ -0.58
APTX-223	ENST00000479656	PDF	Q9HBH1	243 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	GLOD4	Q9HC38	313 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	SAYSD1	Q9NPB0	183 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	NT5M	Q9NPB1	228 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	SPHK2	Q9NRA0	654 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656	UBP1	Q9NZI7	540 aa		11.43	□□□□□ -0.58
APTX-223	ENST00000479656		A0A1W2PPC1	479 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	CBX4	O00257	560 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	CACNG3	O60359	315 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	TPSB2	P20231	275 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	CSK	P41240	450 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	MAGEA4	P43358	317 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	MMP13	P45452	471 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	MAX	P61244	160 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	ITK	Q08881	620 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	LBR	Q14739	615 aa	Known RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	FASTKD3	Q14CZ7	662 aa	Known RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	TPSAB1	Q15661	275 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	KYNU	Q16719	465 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	CTC1	Q2NKJ3	1217 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	CFAP58	Q5T655	872 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	ZNF783	Q6ZMS7	281 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	CAND1	Q86VP6	1230 aa	Known RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	CCDC117	Q8IWD4	279 aa	Predicted RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	APCDD1	Q8J025	514 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	IQCK	Q8N0W5	287 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	TEX26	Q8N6G2	289 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	MCU	Q8NE86	351 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	SPATA22	Q8NHS9	363 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	ALG14	Q96F25	216 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	SERPINB12	Q96P63	405 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	KIF9	Q9HAQ2	790 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	GDE1	Q9NZC3	331 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	OR51B4	Q9Y5P0	310 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	TTC24	A2A3L6	582 aa	Predicted RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	NEDD8-MDP1	E9PL57	170 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	ALOX15B	O15296	676 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	SNAP91	O60641	907 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	MT-CYB	P00156	380 aa	Predicted RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	LTBR	P36941	435 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	FAM193A	P78312	1265 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	OLIG2	Q13516	323 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	SLC29A2	Q14542	456 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	PRPSAP1	Q14558	356 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	BBS9	Q3SYG4	887 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	LY6G5C	Q5SRR4	150 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	TRIM68	Q6AZZ1	485 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	ANKMY2	Q8IV38	441 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	ZBED8	Q8IZ13	594 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	PDIK1L	Q8N165	341 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	MICALL1	Q8N3F8	863 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	PGBD5	Q8N414	524 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	FIBIN	Q8TAL6	211 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	UHMK1	Q8TAS1	419 aa	Known RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	OTUB2	Q96DC9	234 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	OXNAD1	Q96HP4	312 aa	Predicted RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	ZIM3	Q96PE6	472 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	FCRL5	Q96RD9	977 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	MLPH	Q9BV36	600 aa	Predicted RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	BBS2	Q9BXC9	721 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	EPB41L4B	Q9H329	900 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	PABPC3	Q9H361	631 aa	Known RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	VIPAS39	Q9H9C1	493 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	DUS2	Q9NX74	493 aa	Known RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	KIAA1522	Q9P206	1035 aa	Predicted RBP	11.42	□□□□□ -0.58
APTX-223	ENST00000479656	VPS28	Q9UK41	221 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	CDH7	Q9ULB5	785 aa		11.42	□□□□□ -0.58
APTX-223	ENST00000479656	TMEM265	A0A087WTH1	108 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	HEPACAM2	A8MVW5	462 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	SOX1	O00570	391 aa	Predicted RBP	11.41	□□□□□ -0.58
APTX-223	ENST00000479656	SLC9A3R1	O14745	358 aa	Predicted RBP	11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms