RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ZNF347Q96SE7 839 aa5.51□□□□□ -1.53
UPF3B-203ENST00000478840 SLF1Q9BQI6 1058 aa5.51□□□□□ -1.53
UPF3B-203ENST00000478840 SLC2A4RGQ9NR83 387 aa5.51□□□□□ -1.53
UPF3B-203ENST00000478840 LRIT1Q9P2V4 623 aa5.51□□□□□ -1.53
UPF3B-203ENST00000478840 FBXO40Q9UH90 709 aa5.51□□□□□ -1.53
UPF3B-203ENST00000478840 ZNF215Q9UL58 517 aaPredicted RBP5.51□□□□□ -1.53
UPF3B-203ENST00000478840 HEMK1Q9Y5R4 338 aaPredicted RBP5.51□□□□□ -1.53
UPF3B-203ENST00000478840 EPN1Q9Y6I3 576 aaPredicted RBP5.51□□□□□ -1.53
UPF3B-203ENST00000478840 EMSYQ7Z589 1322 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.5□□□□□ -1.53
UPF3B-203ENST00000478840 A0A1W2PRQ8 180 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 PABPN1LA6NDY0 278 aaKnown RBP5.5□□□□□ -1.53
UPF3B-203ENST00000478840 DNTTP04053 509 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 CPA2P48052 419 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 CYP4A11Q02928 519 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 ZBTB16Q05516 673 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 SLC14A1Q13336 389 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 GSTA3Q16772 222 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 FBXO43Q4G163 708 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 FNDC7Q5VTL7 733 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 ERICH6BQ5W0A0 696 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 TMEM65Q6PI78 240 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 SARM1Q6SZW1 724 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 TRIM72Q6ZMU5 477 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 SLC29A4Q7RTT9 530 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 C16orf71Q8IYS4 520 aaPredicted RBP5.5□□□□□ -1.53
UPF3B-203ENST00000478840 ADGRF2Q8IZF7 708 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 TMEM116Q8NCL8 245 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 ZFPM2Q8WW38 1151 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 DAZAP1Q96EP5 407 aaKnown RBP5.5□□□□□ -1.53
UPF3B-203ENST00000478840 CALML4Q96GE6 196 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 C20orf173Q96LM9 149 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 FRG2BQ96QU4 278 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 NUAK2Q9H093 628 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 SCPEP1Q9HB40 452 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 C20orf141Q9NUB4 165 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 ARL15Q9NXU5 204 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 KIAA1456Q9P272 454 aa5.5□□□□□ -1.53
UPF3B-203ENST00000478840 NFKBIL1Q9UBC1 381 aaPredicted RBP5.5□□□□□ -1.53
UPF3B-203ENST00000478840 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.49□□□□□ -1.53
UPF3B-203ENST00000478840 A0A1W2PQF6 199 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 SYNDIG1LA6NDD5 238 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 KRTAP9-7A8MTY7 169 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 CCER2I3L3R5 266 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 STRNO43815 780 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 EXOC3O60645 756 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 PAGE4O60829 102 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 TACC1O75410 805 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 GJB3O75712 270 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 OR2C1O95371 312 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 ADAP00813 363 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 SERPINC1P01008 464 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 GALTP07902 379 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 FMO4P31512 558 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 PBX3P40426 434 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 GARSP41250 739 aaKnown RBP5.49□□□□□ -1.53
UPF3B-203ENST00000478840 SOX2P48431 317 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 IFI35P80217 286 aaPredicted RBP5.49□□□□□ -1.53
UPF3B-203ENST00000478840 HOXA4Q00056 320 aaPredicted RBP5.49□□□□□ -1.53
UPF3B-203ENST00000478840 FOXI1Q12951 378 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 STK4Q13043 487 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 CRYMQ14894 314 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 ZNF169Q14929 603 aaPredicted RBP5.49□□□□□ -1.53
UPF3B-203ENST00000478840 PLK5Q496M5 336 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 ATG9BQ674R7 924 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 CEP85Q6P2H3 762 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 RANBP10Q6VN20 620 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 NAPRTQ6XQN6 538 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 TTLL10Q6ZVT0 673 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 PRSS45Q7RTY3 260 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 SLC46A3Q7Z3Q1 461 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 ANKRD23Q86SG2 305 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 TADA2BQ86TJ2 420 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 KLBQ86Z14 1044 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 FRMD1Q8N878 549 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 CADM4Q8NFZ8 388 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 POMGNT1Q8WZA1 660 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 CCDC17Q96LX7 622 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 ADAD1Q96M93 576 aaKnown RBP5.49□□□□□ -1.53
UPF3B-203ENST00000478840 MACROD1Q9BQ69 325 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 TXLNGYQ9BZA5 131 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 SLC32A1Q9H598 525 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 ZNF70Q9UC06 446 aaPredicted RBP5.49□□□□□ -1.53
UPF3B-203ENST00000478840 PCDHGB4Q9UN71 923 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 ADAM18Q9Y3Q7 739 aa5.49□□□□□ -1.53
UPF3B-203ENST00000478840 SALL3Q9BXA9 1300 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 FNDC1Q4ZHG4 1894 aaPredicted RBP5.48□□□□□ -1.53
UPF3B-203ENST00000478840 FRMD3A2A2Y4 597 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 A8MZ25 164 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 MYO1GB0I1T2 1018 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 DKC1O60832 514 aaKnown RBP eCLIP5.48□□□□□ -1.538e-7■■■□□ 17.2
UPF3B-203ENST00000478840 ERAL1O75616 437 aaKnown RBP5.48□□□□□ -1.53
UPF3B-203ENST00000478840 HEXAP06865 529 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 CYP2D6P10635 497 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 FCGR2AP12318 317 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 RARGP13631 454 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 AKR1A1P14550 325 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 CD72P21854 359 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 UBA7P41226 1012 aa5.48□□□□□ -1.53
UPF3B-203ENST00000478840 PTPN9P43378 593 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms