RNA–Protein interactions for RNA: ENST00000478279.5

APTX-222, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 684 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-222	ENST00000478279	ITGA2B	P08514	1039 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	SFTPC	P11686	197 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	NME1	P15531	152 aa	Known RBP	10.87	□□□□□ -0.67
APTX-222	ENST00000478279	ME1	P48163	572 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	CNGA2	Q16280	664 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	CRTC1	Q6UUV9	634 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279		Q6ZVU0	165 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	PTAR1	Q7Z6K3	402 aa	Predicted RBP	10.87	□□□□□ -0.67
APTX-222	ENST00000478279	UBR7	Q8N806	425 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	WDR48	Q8TAF3	677 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	TFAP2B	Q92481	460 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	EXTL1	Q92935	676 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	ALG14	Q96F25	216 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	BTN2A3P	Q96KV6	586 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	BMF	Q96LC9	184 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	GPR27	Q9NS67	375 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	WDR70	Q9NW82	654 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	ANKMY1	Q9P2S6	941 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	ZFR2	Q9UPR6	939 aa	Known RBP	10.87	□□□□□ -0.67
APTX-222	ENST00000478279	NAALADL1	Q9UQQ1	740 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	COQ4	Q9Y3A0	265 aa		10.87	□□□□□ -0.67
APTX-222	ENST00000478279	TCAF2	A6NFQ2	919 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	KPNA3	O00505	521 aa	Predicted RBP	10.86	□□□□□ -0.67
APTX-222	ENST00000478279	TPP1	O14773	563 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	BNIP3L	O60238	219 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	PCDH8	O95206	1070 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	MYL1	P05976	194 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	PAEP	P09466	180 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	FZD2	Q14332	565 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	NR0B2	Q15466	257 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	TMEM259	Q4ZIN3	620 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	ZC3H12A	Q5D1E8	599 aa	Known RBP	10.86	□□□□□ -0.67
APTX-222	ENST00000478279	PERM1	Q5SV97	790 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	TTC39B	Q5VTQ0	682 aa	Predicted RBP	10.86	□□□□□ -0.67
APTX-222	ENST00000478279	OR6B2	Q6IFH4	312 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	CXorf57	Q6NSI4	855 aa	Known RBP	10.86	□□□□□ -0.67
APTX-222	ENST00000478279	KYAT3	Q6YP21	454 aa	Known RBP	10.86	□□□□□ -0.67
APTX-222	ENST00000478279	BEND5	Q7L4P6	421 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	TAC4	Q86UU9	113 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	CIR1	Q86X95	450 aa	Predicted RBP	10.86	□□□□□ -0.67
APTX-222	ENST00000478279	SH2D3C	Q8N5H7	860 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	ATP6V0D2	Q8N8Y2	350 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	GLMN	Q92990	594 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	FEM1A	Q9BSK4	669 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	MIS12	Q9H081	205 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	SLC12A6	Q9UHW9	1150 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	MAPK8IP1	Q9UQF2	711 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.86	□□□□□ -0.67
APTX-222	ENST00000478279	PCDHGA7	Q9Y5G6	932 aa		10.86	□□□□□ -0.67
APTX-222	ENST00000478279	SPTBN1	Q01082	2364 aa	Known RBP	10.85	□□□□□ -0.67
APTX-222	ENST00000478279	SPTY2D1-AS1	A0A0U1RR47	76 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	POM121B	A6NF01	834 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	KCNU1	A8MYU2	1149 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279		M0QYV0	167 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	MUSK	O15146	869 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	SART1	O43290	800 aa	Known RBP	10.85	□□□□□ -0.67
APTX-222	ENST00000478279	AQP9	O43315	295 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	NOBOX	O60393	691 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	RHOBTB3	O94955	611 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	CTSL	P07711	333 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	GP1BB	P13224	206 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	SLC5A2	P31639	672 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	CHRNA3	P32297	505 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	RPIA	P49247	311 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	UBAP2L	Q14157	1087 aa	Known RBP	10.85	□□□□□ -0.67
APTX-222	ENST00000478279	DRAP1	Q14919	205 aa	Predicted RBP	10.85	□□□□□ -0.67
APTX-222	ENST00000478279	STIL	Q15468	1287 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	DEFB133	Q30KQ1	61 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	CBWD6	Q4V339	395 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	ZCWPW2	Q504Y3	356 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	CBWD3	Q5JTY5	395 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	RABGAP1L	Q5R372	815 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	CBWD5	Q5RIA9	395 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	SYPL2	Q5VXT5	272 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	SEL1L3	Q68CR1	1132 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	TMEM270	Q6UE05	265 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	C14orf80	Q86SX3	495 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	PARG	Q86W56	976 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	GUF1	Q8N442	669 aa	Known RBP	10.85	□□□□□ -0.67
APTX-222	ENST00000478279	TMIE	Q8NEW7	156 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	LMX1A	Q8TE12	382 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	NAT6	Q93015	286 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	RNF34	Q969K3	372 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	CCDC47	Q96A33	483 aa	Known RBP	10.85	□□□□□ -0.67
APTX-222	ENST00000478279	FAM149B1	Q96BN6	582 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	LIN37	Q96GY3	246 aa	Predicted RBP	10.85	□□□□□ -0.67
APTX-222	ENST00000478279	CCDC114	Q96M63	670 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	IL12RB2	Q99665	862 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	PRMT1	Q99873	361 aa	Known RBP	10.85	□□□□□ -0.67
APTX-222	ENST00000478279	ZSWIM1	Q9BR11	485 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	BOC	Q9BWV1	1114 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	SLC17A9	Q9BYT1	436 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	DYRK4	Q9NR20	520 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
APTX-222	ENST00000478279	SEPT3	Q9UH03	358 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	IPO11	Q9UI26	975 aa	Known RBP	10.85	□□□□□ -0.67
APTX-222	ENST00000478279	KLF15	Q9UIH9	416 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	ACSL6	Q9UKU0	697 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	OR51B4	Q9Y5P0	310 aa		10.85	□□□□□ -0.67
APTX-222	ENST00000478279	PLD2	O14939	933 aa		10.84	□□□□□ -0.67

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