RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 NCEH1Q6PIU2 408 aa22.26■■□□□ 1.15
COL9A3-211ENST00000477612 SLFN11Q7Z7L1 901 aa22.26■■□□□ 1.15
COL9A3-211ENST00000477612 ATP11CQ8NB49 1132 aa22.26■■□□□ 1.15
COL9A3-211ENST00000477612 OR2A12Q8NGT7 310 aa22.26■■□□□ 1.15
COL9A3-211ENST00000477612 NDFIP2Q9NV92 336 aa22.26■■□□□ 1.15
COL9A3-211ENST00000477612 CABIN1Q9Y6J0 2220 aa22.26■■□□□ 1.15
COL9A3-211ENST00000477612 A0A1W2PPC4 97 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 A0A1W2PQJ5 194 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 ANKRD62A6NC57 917 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 SMAD6O43541 496 aaKnown RBP22.25■■□□□ 1.15
COL9A3-211ENST00000477612 FSBPO95073 299 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 ZNF883P0CG24 379 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 CD59P13987 128 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 GLDCP23378 1020 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 PMLP29590 882 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 ETFBP38117 255 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 GRIA4P48058 902 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 CCR5P51681 352 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 ADPRHP54922 357 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 MAMLD1Q13495 774 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 RETSATQ6NUM9 610 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 IL27RAQ6UWB1 636 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 TBC1D31Q96DN5 1066 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 TM9SF3Q9HD45 589 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 PARVAQ9NVD7 372 aa22.25■■□□□ 1.15
COL9A3-211ENST00000477612 C1QTNF3-AMACRE9PGA6 284 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 K7ERQ8 282 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 DDX3XO00571 662 aaKnown RBP eCLIP22.24■■□□□ 1.152e-17■■□□□ 11.5
COL9A3-211ENST00000477612 GIPC1O14908 333 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 ZNF821O75541 412 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-211ENST00000477612 METAP1P53582 386 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 UBASH3AP57075 661 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 ARF5P84085 180 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 OGDHQ02218 1023 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 KLHL30Q0D2K2 578 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 ZSCAN23Q3MJ62 389 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 DCUN1D2Q6PH85 259 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 DRC7Q8IY82 874 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 TMIEQ8NEW7 156 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 OR2I1PQ8NGU4 316 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 PIP4K2CQ8TBX8 421 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 SNX19Q92543 992 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 CCDC114Q96M63 670 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 CEP44Q9C0F1 390 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 MAGEH1Q9H213 219 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 SLC32A1Q9H598 525 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 EBF2Q9HAK2 575 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 ATP13A1Q9HD20 1204 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 FZD10Q9ULW2 581 aa22.24■■□□□ 1.15
COL9A3-211ENST00000477612 FARP1Q9Y4F1 1045 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-211ENST00000477612 PLRG1O43660 514 aaKnown RBP22.23■■□□□ 1.15
COL9A3-211ENST00000477612 RTN2O75298 545 aa22.23■■□□□ 1.15
COL9A3-211ENST00000477612 CD160O95971 181 aa22.23■■□□□ 1.15
COL9A3-211ENST00000477612 CTSLP07711 333 aa22.23■■□□□ 1.15
COL9A3-211ENST00000477612 CSNK1EP49674 416 aaKnown RBP22.23■■□□□ 1.15
COL9A3-211ENST00000477612 SERPINH1P50454 418 aaKnown RBP22.23■■□□□ 1.15
COL9A3-211ENST00000477612 RACK1P63244 317 aaKnown RBP22.23■■□□□ 1.15
COL9A3-211ENST00000477612 LINGO4Q6UY18 593 aa22.23■■□□□ 1.15
COL9A3-211ENST00000477612 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP22.23■■□□□ 1.15
COL9A3-211ENST00000477612 DBX2Q6ZNG2 339 aa22.23■■□□□ 1.15
COL9A3-211ENST00000477612 OR14C36Q8NHC7 312 aa22.23■■□□□ 1.15
COL9A3-211ENST00000477612 SYN2Q92777 582 aaPredicted RBP22.23■■□□□ 1.15
COL9A3-211ENST00000477612 ARHGEF2Q92974 986 aaKnown RBP22.23■■□□□ 1.15
COL9A3-211ENST00000477612 IQCDQ96DY2 449 aa22.23■■□□□ 1.15
COL9A3-211ENST00000477612 SPON2Q9BUD6 331 aa22.23■■□□□ 1.15
COL9A3-211ENST00000477612 ISCUQ9H1K1 167 aa22.23■■□□□ 1.15
COL9A3-211ENST00000477612 A0A1B0GVT2 93 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 FAM47DPA6NHR8 397 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 WASH4PA8MWX3 477 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 TMCO5BA8MYB1 307 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 GOLGA6L19H0YKK7 550 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 CBX4O00257 560 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 LATO43561 262 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 CER1O95813 267 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 FTLP02792 175 aaPredicted RBP22.22■■□□□ 1.15
COL9A3-211ENST00000477612 CHRNA3P32297 505 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 HNRNPDQ14103 355 aaKnown RBP22.22■■□□□ 1.15
COL9A3-211ENST00000477612 TEAD4Q15561 434 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 EFHC2Q5JST6 749 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 AGBL4Q5VU57 503 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 HGSNATQ68CP4 663 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 RWDD4Q6NW29 188 aaKnown RBP22.22■■□□□ 1.15
COL9A3-211ENST00000477612 C22orf39Q6P5X5 142 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 PLPP6Q8IY26 295 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 PYROXD2Q8N2H3 581 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 DEFB124Q8NES8 71 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 FNIP1Q8TF40 1166 aa22.22■■□□□ 1.15
COL9A3-211ENST00000477612 ISG20Q96AZ6 181 aaKnown RBP22.22■■□□□ 1.15
COL9A3-211ENST00000477612 BZW2Q9Y6E2 419 aaKnown RBP22.22■■□□□ 1.15
COL9A3-211ENST00000477612 TMEM191CA6NGB0 347 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 SKILP12757 684 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 DESP17661 470 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 ACVRL1P37023 503 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 SHC2P98077 582 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 CNTN1Q12860 1018 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 HLA-BQ31612 363 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 SCYL2Q6P3W7 929 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 TMC6Q7Z403 805 aa22.21■■□□□ 1.15
COL9A3-211ENST00000477612 PCDH20Q8N6Y1 951 aaKnown RBP22.21■■□□□ 1.15
COL9A3-211ENST00000477612 GAREM1Q9H706 876 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms