RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	AOC1	P19801	751 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	FGFR2	P21802	821 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	JAK1	P23458	1154 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	IL32	P24001	234 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	HIBADH	P31937	336 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	FOXN2	P32314	431 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	COIL	P38432	576 aa	Predicted RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	GRIA2	P42262	883 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	NEK3	P51956	506 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	ZNF132	P52740	706 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	GNG2	P59768	71 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	POLR2F	P61218	127 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	STX1B	P61266	288 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	TIMM10	P62072	90 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	OCA2	Q04671	838 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	PPAT	Q06203	517 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	CACNB2	Q08289	660 aa	Predicted RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	FCHO2	Q0JRZ9	810 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	GALNT1	Q10472	559 aa	Predicted RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	TRAP1	Q12931	704 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	STX3	Q13277	289 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	PPP2R5C	Q13362	524 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	SNAPC2	Q13487	334 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	DPYS	Q14117	519 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	CYTH1	Q15438	398 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	TMEM266	Q2M3C6	531 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	TRIM16L	Q309B1	348 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	ZBED5	Q49AG3	693 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	CERKL	Q49MI3	558 aa	Predicted RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	KCTD21	Q4G0X4	260 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	IRAK1BP1	Q5VVH5	260 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	RFWD3	Q6PCD5	774 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	RHBDF2	Q6PJF5	856 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	LVRN	Q6Q4G3	990 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	CYP2R1	Q6VVX0	501 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	SLC30A10	Q6XR72	485 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	SPATA31D4	Q6ZUB0	917 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	USP49	Q70CQ1	688 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	CHST3	Q7LGC8	479 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	GPR141	Q7Z602	305 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	MTDH	Q86UE4	582 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	TRABD2A	Q86V40	505 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	MICU3	Q86XE3	530 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	NIM1K	Q8IY84	436 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	ULK2	Q8IYT8	1036 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	MYO1H	Q8N1T3	1032 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	ELMOD1	Q8N336	334 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	ANKRD13C	Q8N6S4	541 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	SLC43A3	Q8NBI5	491 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	VPS37A	Q8NEZ2	397 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	PNPT1	Q8TCS8	783 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	MGARP	Q8TDB4	240 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	DTX3L	Q8TDB6	740 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	GDPD5	Q8WTR4	605 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	CPA5	Q8WXQ8	436 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	MAML1	Q92585	1016 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	PHKB	Q93100	1093 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	CFAP36	Q96G28	342 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	FCRL3	Q96P31	734 aa	Predicted RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	ACAP3	Q96P50	834 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	SERPINI1	Q99574	410 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	DOK1	Q99704	481 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	NAP1L4	Q99733	375 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	DHRS9	Q9BPW9	319 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	SHCBP1L	Q9BZQ2	653 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	WDR12	Q9GZL7	423 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	PAIP1	Q9H074	479 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	PCED1A	Q9H1Q7	454 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	BLZF1	Q9H2G9	400 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	CDC42EP4	Q9H3Q1	356 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	EHD1	Q9H4M9	534 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	RMND5A	Q9H871	391 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	AS3MT	Q9HBK9	375 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	KCNQ5	Q9NR82	932 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	GJB4	Q9NTQ9	266 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	MRGBP	Q9NV56	204 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	STMN3	Q9NZ72	180 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	HEY2	Q9UBP5	337 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	POLL	Q9UGP5	575 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	PRPF19	Q9UMS4	504 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	NENF	Q9UMX5	172 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	NAALADL1	Q9UQQ1	740 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	WBP11	Q9Y2W2	641 aa	Known RBP	4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	SNX24	Q9Y343	169 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	PCDHA3	Q9Y5H8	950 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	COL4A3BP	Q9Y5P4	624 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	NOX1	Q9Y5S8	564 aa		4.83	□□□□□ -1.64
PTCD3-212	ENST00000477520	MYH1	P12882	1939 aa		4.82	□□□□□ -1.64
PTCD3-212	ENST00000477520	CCDC88A	Q3V6T2	1871 aa		4.82	□□□□□ -1.64
PTCD3-212	ENST00000477520	GAK	O14976	1311 aa		4.82	□□□□□ -1.64
PTCD3-212	ENST00000477520	TNKS	O95271	1327 aa		4.82	□□□□□ -1.64
PTCD3-212	ENST00000477520	LOC105371267	A0A1B0GV96	52 aa		4.82	□□□□□ -1.64
PTCD3-212	ENST00000477520	ILVBL	A1L0T0	632 aa		4.82	□□□□□ -1.64
PTCD3-212	ENST00000477520	ISPD	A4D126	451 aa		4.82	□□□□□ -1.64
PTCD3-212	ENST00000477520	TRIM49B	A6NDI0	452 aa		4.82	□□□□□ -1.64
PTCD3-212	ENST00000477520	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	4.82	□□□□□ -1.64
PTCD3-212	ENST00000477520	TXNDC9	O14530	226 aa		4.82	□□□□□ -1.64
PTCD3-212	ENST00000477520	TNFRSF10C	O14798	259 aa		4.82	□□□□□ -1.64
PTCD3-212	ENST00000477520	HAT1	O14929	419 aa		4.82	□□□□□ -1.64

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