RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 HOXB8P17481 243 aaPredicted RBP13.08□□□□□ -0.32
VPS13D-205ENST00000473099 NFKB1P19838 968 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 MAGEA3P43357 314 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 GEMP55040 296 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 USP4Q13107 963 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 SLC29A2Q14542 456 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 SLC5A9Q2M3M2 681 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 STXBP5Q5T5C0 1151 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 ZNF697Q5TEC3 545 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 FAXCQ5TGI0 409 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 ARMC3Q5W041 872 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 NAPEPLDQ6IQ20 393 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 LRRC8BQ6P9F7 803 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 ARHGAP36Q6ZRI8 547 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 CIR1Q86X95 450 aaPredicted RBP13.08□□□□□ -0.32
VPS13D-205ENST00000473099 CCNJLQ8IV13 435 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 ZBED8Q8IZ13 594 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 TAB3Q8N5C8 712 aaPredicted RBP13.08□□□□□ -0.32
VPS13D-205ENST00000473099 TEX26Q8N6G2 289 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 EFHBQ8N7U6 833 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 VN1R2Q8NFZ6 395 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 MYEOVQ96EZ4 313 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 SH3GL2Q99962 352 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 NAT9Q9BTE0 207 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 GLOD4Q9HC38 313 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 RBM22Q9NW64 420 aaKnown RBP eCLIP13.08□□□□□ -0.32
VPS13D-205ENST00000473099 NINJ2Q9NZG7 142 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 TRANK1O15050 2925 aa13.08□□□□□ -0.32
VPS13D-205ENST00000473099 TMEM265A0A087WTH1 108 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 A0A087WUV0 522 aaPredicted RBP13.07□□□□□ -0.32
VPS13D-205ENST00000473099 GOLGA8KD6RF30 607 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 KDELR3O43731 214 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 TSPAN3O60637 253 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 CD68P34810 354 aaPredicted RBP13.07□□□□□ -0.32
VPS13D-205ENST00000473099 MMP13P45452 471 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 GEMIN4P57678 1058 aaKnown RBP13.07□□□□□ -0.32
VPS13D-205ENST00000473099 FAM193AP78312 1265 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 ZXDBP98169 803 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 SLC12A1Q13621 1099 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 CDH18Q13634 790 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 STAT4Q14765 748 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 SLC14A2Q15849 920 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 ZNF77Q15935 545 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 BBS9Q3SYG4 887 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 RNF43Q68DV7 783 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 IL31Q6EBC2 164 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 Q7L0L9 218 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 METTL3Q86U44 580 aaKnown RBP13.07□□□□□ -0.32
VPS13D-205ENST00000473099 BBS7Q8IWZ6 715 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 CNPY4Q8N129 248 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 CELF5Q8N6W0 485 aaKnown RBP13.07□□□□□ -0.32
VPS13D-205ENST00000473099 CNTD1Q8N815 330 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 PDCD7Q8N8D1 485 aaKnown RBP13.07□□□□□ -0.32
VPS13D-205ENST00000473099 USP13Q92995 863 aaPredicted RBP13.07□□□□□ -0.32
VPS13D-205ENST00000473099 ACE2Q9BYF1 805 aaPredicted RBP13.07□□□□□ -0.32
VPS13D-205ENST00000473099 CEP41Q9BYV8 373 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 SLC25A51Q9H1U9 297 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 EPB41L4BQ9H329 900 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 ATP13A1Q9HD20 1204 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 VPS45Q9NRW7 570 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 NFS1Q9Y697 457 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 TEX264Q9Y6I9 313 aa13.07□□□□□ -0.32
VPS13D-205ENST00000473099 PRRC2BQ5JSZ5 2229 aaKnown RBP13.07□□□□□ -0.32
VPS13D-205ENST00000473099 KIAA1549LQ6ZVL6 1849 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 EPOPA6NHQ4 379 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 AGPSO00116 658 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 TRDMT1O14717 391 aaKnown RBP13.06□□□□□ -0.32
VPS13D-205ENST00000473099 TCEA3O75764 348 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 ACSL3O95573 720 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 PEX11BO96011 259 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 HLA-DQB2P05538 268 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 MYZAPP0CAP1 466 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 CEBPBP17676 345 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 CES1P23141 567 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 HOXD9P28356 352 aaPredicted RBP13.06□□□□□ -0.32
VPS13D-205ENST00000473099 NTHL1P78549 312 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 MPP3Q13368 585 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 ZNF235Q14590 738 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 LBRQ14739 615 aaKnown RBP13.06□□□□□ -0.32
VPS13D-205ENST00000473099 KYNUQ16719 465 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 CEP85LQ5SZL2 805 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 FNBP1LQ5T0N5 605 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 KCTD11Q693B1 232 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 CXorf57Q6NSI4 855 aaKnown RBP13.06□□□□□ -0.32
VPS13D-205ENST00000473099 GPR149Q86SP6 731 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 CAND1Q86VP6 1230 aaKnown RBP13.06□□□□□ -0.32
VPS13D-205ENST00000473099 MFN1Q8IWA4 741 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 PALM2Q8IXS6 379 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 RIBC1Q8N443 379 aaPredicted RBP13.06□□□□□ -0.32
VPS13D-205ENST00000473099 CARNMT1Q8N4J0 409 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 USP33Q8TEY7 942 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 DDI1Q8WTU0 396 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 PABPC5Q96DU9 382 aaKnown RBP13.06□□□□□ -0.32
VPS13D-205ENST00000473099 C9orf72Q96LT7 481 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 POLR1EQ9GZS1 481 aaKnown RBP13.06□□□□□ -0.32
VPS13D-205ENST00000473099 STMN4Q9H169 189 aaPredicted RBP13.06□□□□□ -0.32
VPS13D-205ENST00000473099 MUC3BQ9H195 1237 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 PDFQ9HBH1 243 aa13.06□□□□□ -0.32
VPS13D-205ENST00000473099 DNAJC17Q9NVM6 304 aaKnown RBP13.06□□□□□ -0.32
VPS13D-205ENST00000473099 GDE1Q9NZC3 331 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms