RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 RPF2Q9H7B2 306 aaKnown RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ZBTB26Q9HCK0 441 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 MID2Q9UJV3 735 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 GNEQ9Y223 722 aaKnown RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 UBR3Q6ZT12 1888 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 RGSL1A5PLK6 1076 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ARNTLO00327 626 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ADCY3O60266 1144 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 GDF11O95390 407 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ALDH1A1P00352 501 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 EDN1P05305 212 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ZSCAN5DPP0CG00 497 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 PAFAH1B3Q15102 231 aaKnown RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 PPP1R26Q5T8A7 1209 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 OLFML1Q6UWY5 402 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 SCARA5Q6ZMJ2 495 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 LENG8Q96PV6 779 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ZNF577Q9BSK1 485 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 NPHS2Q9NP85 383 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 SDR39U1Q9NRG7 319 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TSR3Q9UJK0 312 aaKnown RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 MRPL11Q9Y3B7 192 aaKnown RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TCRBV5S2A0A599 114 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 GIPC1O14908 333 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ZBTB39O15060 712 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 HOXB8P17481 243 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 XPAP23025 273 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ME2P23368 584 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 GP5P40197 560 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 NAA20P61599 178 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CYP4A11Q02928 519 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ACOX1Q15067 660 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 MMEL1Q495T6 779 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 IQCCQ4KMZ1 466 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CCDC80Q76M96 950 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 PATL1Q86TB9 770 aaKnown RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 RETREG3Q86VR2 466 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 LGI2Q8N0V4 545 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ANKRD52Q8NB46 1076 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 KIFC1Q9BW19 673 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CLIC5Q9NZA1 410 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ENPP5Q9UJA9 477 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 CPQQ9Y646 472 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 LRRIQ4A6NIV6 560 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 FBP2O00757 339 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TRIM13O60858 407 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 PFKMP08237 780 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 HOXB9P17482 250 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 GRM5P41594 1212 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 IFITM3Q01628 133 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 MPP3Q13368 585 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 PRPSAP1Q14558 356 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 PSMD5Q16401 504 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 SATL1Q86VE3 508 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ADGRG5Q8IZF4 528 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 TTC30BQ8N4P2 665 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 ADAM33Q9BZ11 813 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 GBA3Q9H227 469 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 GKN1Q9NS71 199 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 OLA1Q9NTK5 396 aaKnown RBP5.45□□□□□ -1.54
SYNE1-220ENST00000471834 IFT52Q9Y366 437 aa5.45□□□□□ -1.54
SYNE1-220ENST00000471834 A0A1B0GTW7 788 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 KLK8O60259 260 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CELF2O95319 508 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 SLC6A2P23975 617 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 HLA-FP30511 346 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 NAMPTP43490 491 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 SLC12A2P55011 1212 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 OSTNP61366 133 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 MLLT1Q03111 559 aaPredicted RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ATP6AP1Q15904 470 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 RASIP1Q5U651 963 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 HMBOX1Q6NT76 420 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 SNX20Q7Z614 316 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ALYREFQ86V81 257 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 RIMKLAQ8IXN7 391 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 C11orf70Q9BRQ4 267 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ATP13A1Q9HD20 1204 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 EPS15L1Q9UBC2 864 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 TMEM247A6NEH6 219 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 HTR1AP08908 422 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CD6P30203 668 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 NME5P56597 212 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 PPP2R2BQ00005 443 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 PPIDQ08752 370 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 KIAA0040Q15053 153 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ANO4Q32M45 955 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 XKR3Q5GH77 459 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 SPOPLQ6IQ16 392 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 FUNDC1Q8IVP5 155 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 KCTD6Q8NC69 237 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ANKK1Q8NFD2 765 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 DDX50Q9BQ39 737 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 Q9H521 79 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 PCDHB9Q9Y5E1 797 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 RLFQ13129 1914 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ANKRD31Q8N7Z5 1873 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 H3BSA7 217 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 H7C0C1 242 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 SLC16A6O15403 523 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms