RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 FUT11Q495W5 492 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 PPP1R15BQ5SWA1 713 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 ARHGAP40Q5TG30 622 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 BROXQ5VW32 411 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 PLEKHA7Q6IQ23 1121 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 ALKBH5Q6P6C2 394 aaKnown RBP12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 ZNF248Q8NDW4 579 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 JOSD2Q8TAC2 188 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 TTC9Q92623 222 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 AZIN2Q96A70 460 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 ZNF653Q96CK0 615 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 TMA16Q96EY4 203 aaKnown RBP12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 PGAP3Q96FM1 320 aaPredicted RBP12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 P2RY11Q96G91 374 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 PANX2Q96RD6 677 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 MKRN2Q9H000 416 aaKnown RBP12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 PCED1AQ9H1Q7 454 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 NHEJ1Q9H9Q4 299 aaPredicted RBP12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 GRPEL1Q9HAV7 217 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 CPNE5Q9HCH3 593 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 OSGEPQ9NPF4 335 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 DDIT4Q9NX09 232 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 ELOVL2Q9NXB9 296 aa12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 CNOT8Q9UFF9 292 aaKnown RBP12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 UBR5O95071 2799 aaPredicted RBP12.27□□□□□ -0.45
SQSTM1-206ENST00000466342 SYNJ2BP-COX16A0A087WUM0 186 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 GOLGA6L3A6NEY3 463 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 C2CD4BA6NLJ0 364 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 H0Y8X5 98 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 ATMINO43313 823 aaPredicted RBP12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 AKR1B10O60218 316 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 DFNA5O60443 496 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 F9P00740 461 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 IGLV3-19P01714 112 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 SLC2A3P11169 496 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 TFE3P19532 575 aaPredicted RBP12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 GPD1P21695 349 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 SDC4P31431 198 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 RFC1P35251 1148 aaPredicted RBP12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 SLC11A2P49281 568 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 NME3Q13232 169 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 MAMLD1Q13495 774 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 ENPP2Q13822 863 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 STARD3Q14849 445 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 GEN1Q17RS7 908 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 ZC3H12AQ5D1E8 599 aaKnown RBP12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 CCDC122Q5T0U0 273 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 MPP7Q5T2T1 576 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 HES3Q5TGS1 186 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 FBXL19Q6PCT2 694 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 BNIPLQ7Z465 357 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 ANKS1BQ7Z6G8 1248 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 CACTIN-AS1Q8N1I8 211 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 RXFP2Q8WXD0 754 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 CCDC42Q96M95 316 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 CFAP57Q96MR6 1250 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 MCEEQ96PE7 176 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 TBCBQ99426 244 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 PARVAQ9NVD7 372 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 TMEM51Q9NW97 253 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.26□□□□□ -0.457e-6■■■□□ 17.5
SQSTM1-206ENST00000466342 COX16Q9P0S2 106 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 THAP10Q9P2Z0 257 aaPredicted RBP12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 SLCO1B1Q9Y6L6 691 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 STON1Q9Y6Q2 735 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 SCINQ9Y6U3 715 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 DOCK4Q8N1I0 1966 aa12.26□□□□□ -0.45
SQSTM1-206ENST00000466342 ANKRD62A6NC57 917 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 GOLGA6L6A8MZA4 724 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 ACSL4O60488 711 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 TSPAN3O60637 253 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 LDOC1O95751 146 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 PDGFRAP16234 1089 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 ABCB4P21439 1286 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 FECHP22830 423 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 HOXD9P28356 352 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 CCR1P32246 355 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 PTPN9P43378 593 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 GRIA4P48058 902 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 RPL7AP62424 266 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 ATP11AP98196 1134 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 DEUP1Q05D60 604 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 DNAJC3Q13217 504 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 MTA1Q13330 715 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 CCDC14Q49A88 953 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 DCUN1D2Q6PH85 259 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 SND1Q7KZF4 910 aaKnown RBP eCLIP12.25□□□□□ -0.453e-8■□□□□ 8.1
SQSTM1-206ENST00000466342 PRICKLE2Q7Z3G6 844 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 TMPRSS6Q8IU80 811 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 ZNF557Q8N988 423 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 SPC24Q8NBT2 197 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 SIPA1Q96FS4 1042 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 CNDP2Q96KP4 475 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 BTN2A3PQ96KV6 586 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 THAP2Q9H0W7 228 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 MRPL47Q9HD33 250 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 TM9SF3Q9HD45 589 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 PIGVQ9NUD9 493 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 MYO1AQ9UBC5 1043 aa12.25□□□□□ -0.45
SQSTM1-206ENST00000466342 CLEC4EQ9ULY5 219 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms