RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SORCS3Q9UPU3 1222 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 PTPRDP23468 1912 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 A0A0U1RQF3 1178 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 M0QZQ0 153 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 PHGDHO43175 533 aaKnown RBP9.1□□□□□ -0.95
SYNE1-217ENST00000466159 TIMM44O43615 452 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 CACNG3O60359 315 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 OR4Q2P0C623 313 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 CYBAP13498 195 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 CCNCP24863 283 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 GABRB3P28472 473 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 AVPR1AP37288 418 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 CDK7P50613 346 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 SLC5A3P53794 718 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 SLC34A1Q06495 639 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 TRIM32Q13049 653 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 CRHR2Q13324 411 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 DNAL1Q4LDG9 190 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 BTBD8Q5XKL5 378 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 RIPOR1Q6ZS17 1223 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 RAPH1Q70E73 1250 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 KDELC2Q7Z4H8 507 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 ATPAF2Q8N5M1 289 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 DNAJC9Q8WXX5 260 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 TRIB2Q92519 343 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 FCRL2Q96LA5 508 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-217ENST00000466159 ANKRD27Q96NW4 1050 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 TSGA13Q96PP4 275 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 KIFC1Q9BW19 673 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 ARHGAP39Q9C0H5 1083 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 STN1Q9H668 368 aaKnown RBP9.1□□□□□ -0.95
SYNE1-217ENST00000466159 COG4Q9H9E3 785 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 PCDHB12Q9Y5F1 795 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 WASF2Q9Y6W5 498 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 NLRC5Q86WI3 1866 aa9.1□□□□□ -0.95
SYNE1-217ENST00000466159 COL4A4P53420 1690 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-217ENST00000466159 TK2O00142 265 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 NVLO15381 856 aaKnown RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 MAFKO60675 156 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 TRIM13O60858 407 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 KLHL2O95198 593 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 HSPA4LO95757 839 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 MOCS2O96007 188 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 AHSGP02765 367 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 ALOX15P16050 662 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 NCF2P19878 526 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 ATP6V1C1P21283 382 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 GRIK1P39086 918 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 VHLP40337 213 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 CSE1LP55060 971 aaKnown RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 COG7P83436 770 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 TUSC3Q13454 348 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 LPIN1Q14693 890 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 MUM1Q2TAK8 710 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 RALGPS1Q5JS13 557 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 ARTNQ5T4W7 220 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 PDPK2PQ6A1A2 396 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 LINC00523Q86TU6 105 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 ZC3HC1Q86WB0 502 aaKnown RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 DENND6AQ8IWF6 608 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 PHTF2Q8N3S3 785 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 SLC25A41Q8N5S1 370 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 MAPK15Q8TD08 544 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 ZNF333Q96JL9 665 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 TBL1YQ9BQ87 522 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 C1orf21Q9H246 121 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 ATXN3LQ9H3M9 355 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 MPP6Q9NZW5 540 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 STX18Q9P2W9 335 aaKnown RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 GABRQQ9UN88 632 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 MYLKQ15746 1914 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 A0A088AWK7 358 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 LOC100653049A0A140TA62 436 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 KRT34O76011 436 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 VAPBO95292 243 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 ASGR1P07306 291 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 CHRNGP07510 517 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 GCKP35557 465 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 CCR10P46092 362 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 GLRBP48167 497 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 GRIK3Q13003 919 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 CTBP1Q13363 440 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 PEX6Q13608 980 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 DSC3Q14574 896 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 ZNF460Q14592 562 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 USP10Q14694 798 aaKnown RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 ANO4Q32M45 955 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 SLC9B1Q4ZJI4 515 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 DENND5AQ6IQ26 1287 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 ESRP1Q6NXG1 681 aaKnown RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 PKN3Q6P5Z2 889 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 LRRC74BQ6ZQY2 392 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 NET1Q7Z628 596 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 SCD5Q86SK9 330 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 SPATA2LQ8IUW3 424 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 SCML4Q8N228 414 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 TMEM151AQ8N4L1 468 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 CFAP61Q8NHU2 1237 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 SCG3Q8WXD2 468 aaKnown RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 MIEF2Q96C03 454 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms