RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PRPSAP2O60256 369 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 CLDN11O75508 207 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 MIPP30301 263 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 ZBTB16Q05516 673 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 SCAPQ12770 1279 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 ZNF177Q13360 481 aaPredicted RBP18.18■□□□□ 0.5
COL7A1-205ENST00000465238 NUMA1Q14980 2115 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 PTPRNQ16849 979 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 C5orf22Q49AR2 442 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 MBLAC2Q68D91 279 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 CIR1Q86X95 450 aaPredicted RBP18.18■□□□□ 0.5
COL7A1-205ENST00000465238 CCAR2Q8N163 923 aaKnown RBP18.18■□□□□ 0.5
COL7A1-205ENST00000465238 SLC35G2Q8TBE7 412 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 GATA6Q92908 595 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 KIAA1522Q9P206 1035 aaPredicted RBP18.18■□□□□ 0.5
COL7A1-205ENST00000465238 FZD10Q9ULW2 581 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 KNL1Q8NG31 2342 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 DOCK4Q8N1I0 1966 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 FAM208BQ5VWN6 2430 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 BCAT2O15382 392 aaPredicted RBP18.17■□□□□ 0.5
COL7A1-205ENST00000465238 LRCH4O75427 683 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 POLR2EP19388 210 aaKnown RBP18.17■□□□□ 0.5
COL7A1-205ENST00000465238 PCK1P35558 622 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 SSR1P43307 286 aaKnown RBP18.17■□□□□ 0.5
COL7A1-205ENST00000465238 CDH4P55283 916 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 OXCT1P55809 520 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 FAM193AP78312 1265 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 NRG1Q02297 640 aaPredicted RBP18.17■□□□□ 0.5
COL7A1-205ENST00000465238 ZNF423Q2M1K9 1284 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 ERMARDQ5T6L9 678 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 RAD9BQ6WBX8 426 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 FAM124AQ86V42 546 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 ZNF683Q8IZ20 524 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 ARFGAP1Q8N6T3 406 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 NIPA2Q8N8Q9 360 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 RFFLQ8WZ73 363 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 OSGEPQ9NPF4 335 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 SUN2Q9UH99 717 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 EIF2B4Q9UI10 523 aaKnown RBP18.17■□□□□ 0.5
COL7A1-205ENST00000465238 MSRB2Q9Y3D2 182 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 PCDHB9Q9Y5E1 797 aa18.17■□□□□ 0.5
COL7A1-205ENST00000465238 IGLV3-10A0A075B6K4 115 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 SH3BP5O60239 455 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 MOCS3O95396 460 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 L1CAMP32004 1257 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 CD70P32970 193 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 TRIP6Q15654 476 aaKnown RBP18.16■□□□□ 0.5
COL7A1-205ENST00000465238 RWDD4Q6NW29 188 aaKnown RBP18.16■□□□□ 0.5
COL7A1-205ENST00000465238 IL27RAQ6UWB1 636 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 TMEM139Q8IV31 216 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 NAXDQ8IW45 347 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 ZNF366Q8N895 744 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 WFDC5Q8TCV5 224 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 PPP1R9BQ96SB3 815 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 MAGEB5Q9BZ81 275 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 ZYG11BQ9C0D3 744 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 PRSS16Q9NQE7 514 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 MPP6Q9NZW5 540 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 PPARGC1AQ9UBK2 798 aaKnown RBP18.16■□□□□ 0.5
COL7A1-205ENST00000465238 ZMIZ1Q9ULJ6 1067 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 AP4E1Q9UPM8 1137 aa18.16■□□□□ 0.5
COL7A1-205ENST00000465238 TMEM110-MUSTN1A8MSY1 372 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 FAM72CH0Y354 149 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 CNTN5O94779 1100 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 PROSCO94903 275 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 CER1O95813 267 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 DNTTP04053 509 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 ZNF883P0CG24 379 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 ACSL1P33121 698 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 ARHGAP25P42331 645 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 NOP2P46087 812 aaKnown RBP18.15■□□□□ 0.5
COL7A1-205ENST00000465238 IRAK1P51617 712 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 RPS14P62263 151 aaKnown RBP18.15■□□□□ 0.5
COL7A1-205ENST00000465238 KRT83P78385 493 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 SLC12A1Q13621 1099 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 MESDQ14696 234 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 HADHQ16836 314 aaKnown RBP18.15■□□□□ 0.5
COL7A1-205ENST00000465238 BOLA3Q53S33 107 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 ALFQ53S48 1182 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 FSCBQ5H9T9 825 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 FAM72AQ5TYM5 149 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 FAM72DQ6L9T8 149 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 FAM72BQ86X60 149 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 PSTKQ8IV42 348 aaKnown RBP18.15■□□□□ 0.5
COL7A1-205ENST00000465238 PYROXD2Q8N2H3 581 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 CCDC112Q8NEF3 446 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 C1orf216Q8TAB5 229 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 TBC1D31Q96DN5 1066 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 CAMK1GQ96NX5 476 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 PEBP4Q96S96 227 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 EPAS1Q99814 870 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 SNRNP25Q9BV90 132 aaKnown RBP18.15■□□□□ 0.5
COL7A1-205ENST00000465238 DHX35Q9H5Z1 703 aaKnown RBP18.15■□□□□ 0.5
COL7A1-205ENST00000465238 GPATCH2LQ9NWQ4 482 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 KLK13Q9UKR3 277 aa18.15■□□□□ 0.5
COL7A1-205ENST00000465238 CABIN1Q9Y6J0 2220 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 FAM221BA6H8Z2 402 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 CREB3O43889 395 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 MTA2O94776 668 aa18.14■□□□□ 0.49
COL7A1-205ENST00000465238 LRIG2O94898 1065 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms