RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 VCX3AQ9NNX9 186 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 DSEQ9UL01 958 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 PLA2G4CQ9UP65 541 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 FARP1Q9Y4F1 1045 aaPredicted RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 FAM95CA0A1B0GW59 222 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 DNAJC6O75061 913 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 PAX7P23759 505 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 GABRB2P47870 512 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 TBX4P57082 545 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 PRKAA1Q13131 559 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 BFSP2Q13515 415 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 DLG2Q15700 870 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 FAM187BQ17R55 369 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 ARHGAP17Q68EM7 881 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 RIPOR1Q6ZS17 1223 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 ACMSDQ8TDX5 336 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 NDNQ99608 321 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 MUC3BQ9H195 1237 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 HIPK3Q9H422 1215 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 IGFLR1Q9H665 355 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 TAS2R1Q9NYW7 299 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 TMEM216Q9P0N5 145 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 HBS1LQ9Y450 684 aaKnown RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 GNGT2O14610 69 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 LRIG2O94898 1065 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 CHRM3P20309 590 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 CYP2C18P33260 490 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 RENBPP51606 427 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 PITX1P78337 314 aaPredicted RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 INCA1Q0VD86 236 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 RBBP7Q16576 425 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 NFE2Q16621 373 aaPredicted RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 KHDC1Q4VXA5 237 aaKnown RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 AGKQ53H12 422 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 RFWD3Q6PCD5 774 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 BNC2Q6ZN30 1099 aaPredicted RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 CDRT15Q96T59 188 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 HNRNPABQ99729 332 aaKnown RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 CADM1Q9BY67 442 aaKnown RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 WDR55Q9H6Y2 383 aaPredicted RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 TRPC7Q9HCX4 862 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 PTPRHQ9HD43 1115 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 TRMT13Q9NUP7 481 aaKnown RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 AFF4Q9UHB7 1163 aaKnown RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 SLC4A7Q9Y6M7 1214 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 DLEC1Q9Y238 1755 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 ERI2A8K979 691 aaKnown RBP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 TYROBPO43914 113 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 ATP6V1B1P15313 513 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 EEF1B2P24534 225 aaKnown RBP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 MSX2P35548 267 aaPredicted RBP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 CDK7P50613 346 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 TEX44Q53QW1 395 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 FAM171A1Q5VUB5 890 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 SETD3Q86TU7 594 aaPredicted RBP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 RELL1Q8IUW5 271 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 ARFGAP1Q8N6T3 406 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 GSTCDQ8NEC7 633 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 FAXDC2Q96IV6 333 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 FCRL2Q96LA5 508 aaPredicted RBP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 EBF4Q9BQW3 602 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 APOL5Q9BWW9 433 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 BRD8Q9H0E9 1235 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 SSU72Q9NP77 194 aaKnown RBP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 PIGVQ9NUD9 493 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 HACD3Q9P035 362 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 TRPC5OSA6NMA1 111 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 SNAI1O95863 264 aaPredicted RBP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 MT-CYBP00156 380 aaPredicted RBP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 PIRTP0C851 137 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 TSPAN8P19075 237 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 OR1E1P30953 314 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 SCNN1BP51168 640 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 PCBP1Q15365 356 aaKnown RBP eCLIP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 AP1ARQ63HQ0 302 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 KYQ8NBH2 561 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 TUBGCP3Q96CW5 907 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 AGAP2Q99490 1192 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 C16orf70Q9BSU1 422 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 UTP6Q9NYH9 597 aaKnown RBP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 PGAP2Q9UHJ9 254 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 ZNF180Q9UJW8 692 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 DTNAQ9Y4J8 743 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 SCAMP3O14828 347 aaKnown RBP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 BIRC5O15392 142 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 SEPT4O43236 478 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 AKAP10O43572 662 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 RAMP2O60895 175 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 EN2P19622 333 aaPredicted RBP11.82□□□□□ -0.52
NPHP4-204ENST00000460696 GRIA4P48058 902 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 PLIN5Q00G26 463 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 DDR2Q16832 855 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 ZRANB3Q5FWF4 1079 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 MRNIPQ6NTE8 343 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 RINLQ6ZS11 566 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 SDCCAG3Q96C92 435 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 MS4A4AQ96JQ5 239 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 RHOBTB2Q9BYZ6 727 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 LRCH1Q9Y2L9 728 aa11.82□□□□□ -0.52
NPHP4-204ENST00000460696 V9GYQ6 96 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms