RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ATP1A3P13637 1013 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 CDO1Q16878 200 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 CLEC16AQ2KHT3 1053 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 C6orf118Q5T5N4 469 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 ACBD5Q5T8D3 534 aaPredicted RBP21.25■□□□□ 0.99
SDC1-205ENST00000447124 AGBL4Q5VU57 503 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 FAM46CQ5VWP2 391 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 TRIM72Q6ZMU5 477 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 ADAT2Q7Z6V5 191 aaKnown RBP21.25■□□□□ 0.99
SDC1-205ENST00000447124 DSG4Q86SJ6 1040 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 DCAF4L2Q8NA75 395 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 CHST14Q8NCH0 376 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 RHBDD1Q8TEB9 315 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 CENPIQ92674 756 aaPredicted RBP21.25■□□□□ 0.99
SDC1-205ENST00000447124 C2orf49Q9BVC5 232 aaPredicted RBP21.25■□□□□ 0.99
SDC1-205ENST00000447124 PPARGC1AQ9UBK2 798 aaKnown RBP21.25■□□□□ 0.99
SDC1-205ENST00000447124 MSRB2Q9Y3D2 182 aa21.25■□□□□ 0.99
SDC1-205ENST00000447124 SPEGQ15772 3267 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 ILVBLA1L0T0 632 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 FAM72CH0Y354 149 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 PLRG1O43660 514 aaKnown RBP21.24■□□□□ 0.99
SDC1-205ENST00000447124 CHRNA3P32297 505 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 RFC1P35251 1148 aaPredicted RBP21.24■□□□□ 0.99
SDC1-205ENST00000447124 TAS2R38P59533 333 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 TYRO3Q06418 890 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 FAM72AQ5TYM5 149 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 FAM72DQ6L9T8 149 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 FAM72BQ86X60 149 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 PHF13Q86YI8 300 aaPredicted RBP21.24■□□□□ 0.99
SDC1-205ENST00000447124 ANKRD20A12PQ8NF67 263 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 ADAMTS14Q8WXS8 1223 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 ARRDC3Q96B67 414 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 SPON2Q9BUD6 331 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 ACE2Q9BYF1 805 aaPredicted RBP21.24■□□□□ 0.99
SDC1-205ENST00000447124 ZYG11BQ9C0D3 744 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 OSBPL2Q9H1P3 480 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 NDFIP2Q9NV92 336 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 TOR4AQ9NXH8 423 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 ADAM22Q9P0K1 906 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 ACTL7AQ9Y615 435 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 DOCK4Q8N1I0 1966 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 PLXNA2O75051 1894 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 TMEM131Q92545 1883 aa21.24■□□□□ 0.99
SDC1-205ENST00000447124 A0A1B0GTQ1 180 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 TCRBV5S1A1TA0A578 114 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 FLRT2O43155 660 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 SLC7A4O43246 635 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 TEX33O43247 280 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 CD160O95971 181 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 MBD3O95983 291 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 ATXN1LP0C7T5 689 aaKnown RBP21.23■□□□□ 0.99
SDC1-205ENST00000447124 KRT3P12035 628 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 CD38P28907 300 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 SDC4P31431 198 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 PTPN9P43378 593 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 HDAC4P56524 1084 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 C21orf59P57076 290 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 IL9RQ01113 521 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 SUZ12Q15022 739 aaKnown RBP21.23■□□□□ 0.99
SDC1-205ENST00000447124 SHBQ15464 509 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 MANEALQ5VSG8 457 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 WDR59Q6PJI9 974 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 AOPEPQ8N6M6 819 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 KDF1Q8NAX2 398 aaPredicted RBP21.23■□□□□ 0.99
SDC1-205ENST00000447124 SERAC1Q96JX3 654 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 AGPAT1Q99943 283 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 KDM4CQ9H3R0 1056 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 AASDHPPTQ9NRN7 309 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 OR12D3Q9UGF7 316 aa21.23■□□□□ 0.99
SDC1-205ENST00000447124 C1QTNF3-AMACRE9PGA6 284 aa21.22■□□□□ 0.99
SDC1-205ENST00000447124 PCDHGA12O60330 932 aa21.22■□□□□ 0.99
SDC1-205ENST00000447124 MAT2AP31153 395 aaKnown RBP21.22■□□□□ 0.99
SDC1-205ENST00000447124 NSFP46459 744 aaKnown RBP21.22■□□□□ 0.99
SDC1-205ENST00000447124 CCT8P50990 548 aa21.22■□□□□ 0.99
SDC1-205ENST00000447124 GSCP56915 257 aaPredicted RBP21.22■□□□□ 0.99
SDC1-205ENST00000447124 ARF5P84085 180 aa21.22■□□□□ 0.99
SDC1-205ENST00000447124 NRG1Q02297 640 aaPredicted RBP21.22■□□□□ 0.99
SDC1-205ENST00000447124 GNA12Q03113 381 aa21.22■□□□□ 0.99
SDC1-205ENST00000447124 ZNF783Q6ZMS7 281 aa21.22■□□□□ 0.99
SDC1-205ENST00000447124 STRADAQ7RTN6 431 aa21.22■□□□□ 0.99
SDC1-205ENST00000447124 PRPF39Q86UA1 669 aaKnown RBP21.22■□□□□ 0.99
SDC1-205ENST00000447124 DRC7Q8IY82 874 aa21.22■□□□□ 0.99
SDC1-205ENST00000447124 CCDC185Q8N715 623 aa21.22■□□□□ 0.99
SDC1-205ENST00000447124 TMIEQ8NEW7 156 aa21.22■□□□□ 0.99
SDC1-205ENST00000447124 TNKS2Q9H2K2 1166 aa21.22■□□□□ 0.99
SDC1-205ENST00000447124 CBX4O00257 560 aa21.21■□□□□ 0.99
SDC1-205ENST00000447124 ACVRL1P37023 503 aa21.21■□□□□ 0.99
SDC1-205ENST00000447124 CLCN6P51797 869 aa21.21■□□□□ 0.99
SDC1-205ENST00000447124 PIP5KL1Q5T9C9 394 aa21.21■□□□□ 0.99
SDC1-205ENST00000447124 DPY19L3Q6ZPD9 716 aa21.21■□□□□ 0.99
SDC1-205ENST00000447124 IRF2BP2Q7Z5L9 587 aa21.21■□□□□ 0.99
SDC1-205ENST00000447124 NLRP14Q86W24 1093 aa21.21■□□□□ 0.99
SDC1-205ENST00000447124 FAM172AQ8WUF8 416 aa21.21■□□□□ 0.99
SDC1-205ENST00000447124 ELF4Q99607 663 aaPredicted RBP21.21■□□□□ 0.99
SDC1-205ENST00000447124 ATP13A1Q9HD20 1204 aa21.21■□□□□ 0.99
SDC1-205ENST00000447124 TPX2Q9ULW0 747 aaKnown RBP21.21■□□□□ 0.99
SDC1-205ENST00000447124 NEU3Q9UQ49 428 aa21.21■□□□□ 0.99
SDC1-205ENST00000447124 NYNRINQ9P2P1 1898 aaKnown RBP21.21■□□□□ 0.99
SDC1-205ENST00000447124 SIGLEC16A6NMB1 481 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 TLR4O00206 839 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms