RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 C2orf49Q9BVC5 232 aaPredicted RBP12.7□□□□□ -0.38
USP40-205ENST00000430158 MUC3BQ9H195 1237 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 MTG2Q9H4K7 406 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 PDFQ9HBH1 243 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 ATP13A1Q9HD20 1204 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 SPATA6Q9NWH7 488 aaPredicted RBP12.7□□□□□ -0.38
USP40-205ENST00000430158 PLA2G4CQ9UP65 541 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 ACTL7AQ9Y615 435 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 WDR87Q6ZQQ6 2873 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 OTOGLQ3ZCN5 2332 aa12.7□□□□□ -0.38
USP40-205ENST00000430158 hCG_1818297A0A087WSY0 165 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 CCDC66A2RUB6 948 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 USP27XA6NNY8 438 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 PRAMEF11O60813 436 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 PEX11BO96011 259 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 KRT1P04264 644 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 SRCP12931 536 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 TNNT1P13805 278 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 PTPN7P35236 360 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 ETFBP38117 255 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 PAPOLAP51003 745 aaKnown RBP12.69□□□□□ -0.38
USP40-205ENST00000430158 SLC20A2Q08357 652 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 DMWDQ09019 674 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 HNRNPA1L2Q32P51 320 aaKnown RBP12.69□□□□□ -0.38
USP40-205ENST00000430158 EOGTQ5NDL2 527 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 C9orf64Q5T6V5 341 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 TMCO3Q6UWJ1 677 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 LINGO4Q6UY18 593 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 ARHGAP36Q6ZRI8 547 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 RASSF3Q86WH2 238 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 RCOR2Q8IZ40 523 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 SYCE1Q8N0S2 351 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 SH2D3CQ8N5H7 860 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 LZTR1Q8N653 840 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 ZNF366Q8N895 744 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 PRSS33Q8NF86 280 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 UBE2Q2Q8WVN8 375 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 PTPRN2Q92932 1015 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 SPON2Q9BUD6 331 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 CALN1Q9BXU9 219 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 PRSS16Q9NQE7 514 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 KCND1Q9NSA2 647 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 DONSONQ9NYP3 566 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 FBXO4Q9UKT5 387 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 AMFRQ9UKV5 643 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 PACSIN2Q9UNF0 486 aaPredicted RBP12.69□□□□□ -0.38
USP40-205ENST00000430158 RAD54BQ9Y620 910 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.69□□□□□ -0.38
USP40-205ENST00000430158 EP300Q09472 2414 aaPredicted RBP12.69□□□□□ -0.38
USP40-205ENST00000430158 VPS13AQ96RL7 3174 aa12.69□□□□□ -0.38
USP40-205ENST00000430158 J3KR12 359 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 CBX4O00257 560 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 DAPK3O43293 454 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 MFSD11O43934 449 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 ZRANB2O95218 330 aaKnown RBP eCLIP12.68□□□□□ -0.38
USP40-205ENST00000430158 PYGMP11217 842 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 HOXB2P14652 356 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 VAV1P15498 845 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 SERPINH1P50454 418 aaKnown RBP12.68□□□□□ -0.38
USP40-205ENST00000430158 DGKEP52429 567 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 COPAP53621 1224 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 GBE1Q04446 702 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 GALNT2Q10471 571 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 TCF15Q12870 199 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 E2F5Q15329 346 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 ANGPT1Q15389 498 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 DLG2Q15700 870 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 PPP2R5EQ16537 467 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 ZNF528Q3MIS6 628 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 FNDC3BQ53EP0 1204 aaKnown RBP12.68□□□□□ -0.38
USP40-205ENST00000430158 MEI1Q5TIA1 1274 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 AADACL2Q6P093 401 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 TSSK4Q6SA08 328 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 SERPINA13PQ6UXR4 307 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 PEX26Q7Z412 305 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 FAM129BQ96TA1 746 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 TLR10Q9BXR5 811 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 PRDM16Q9HAZ2 1276 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 EBF1Q9UH73 591 aa12.68□□□□□ -0.38
USP40-205ENST00000430158 ARHGAP42A6NI28 874 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 MIF4GDA9UHW6 222 aaKnown RBP12.67□□□□□ -0.38
USP40-205ENST00000430158 LAMTOR5O43504 91 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 MAFKO60675 156 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 SIN3BO75182 1162 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 SP9P0CG40 484 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 KRT10P13645 584 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 GABRG2P18507 467 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 RWDD2BP57060 319 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 COPS2P61201 443 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 CYTH1Q15438 398 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 INO80DQ53TQ3 878 aaPredicted RBP12.67□□□□□ -0.38
USP40-205ENST00000430158 TFDP3Q5H9I0 405 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 IL31Q6EBC2 164 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 RETSATQ6NUM9 610 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 CAMKK1Q8N5S9 505 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 ISG20Q96AZ6 181 aaKnown RBP12.67□□□□□ -0.38
USP40-205ENST00000430158 ZNF419Q96HQ0 510 aaPredicted RBP12.67□□□□□ -0.38
USP40-205ENST00000430158 TSGA13Q96PP4 275 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 HHIPQ96QV1 700 aa12.67□□□□□ -0.38
USP40-205ENST00000430158 MKRN2Q9H000 416 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms