RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CALN1Q9BXU9 219 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 TNKS2Q9H2K2 1166 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 PREBQ9HCU5 417 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 ANLNQ9NQW6 1124 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 TMPRSS4Q9NRS4 437 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 ARHGEF38Q9NXL2 777 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 RRN3Q9NYV6 651 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 MPP6Q9NZW5 540 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 ARHGAP20Q9P2F6 1191 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 PPM1HQ9ULR3 514 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 PAXBP1Q9Y5B6 917 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 OR51B4Q9Y5P0 310 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 FHOD1Q9Y613 1164 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 AK5Q9Y6K8 562 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 LAMA5O15230 3695 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 EIF4E1BA6NMX2 242 aaKnown RBP14.86□□□□□ -0.03
SDC1-204ENST00000429035 PRAMEF26H0Y7S4 382 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 PCDH8O95206 1070 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 THEGLP0DJG4 465 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 GLDCP23378 1020 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 CHRNA3P32297 505 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 NUDT1P36639 197 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 ABCG1P45844 678 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 SEMG2Q02383 582 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 DRAP1Q14919 205 aaPredicted RBP14.86□□□□□ -0.03
SDC1-204ENST00000429035 PIP5KL1Q5T9C9 394 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 ZDHHC17Q8IUH5 632 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 DCAF4L2Q8NA75 395 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 MLKLQ8NB16 471 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 CHST14Q8NCH0 376 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 ZNF397Q8NF99 534 aaPredicted RBP14.86□□□□□ -0.03
SDC1-204ENST00000429035 OR7D4Q8NG98 312 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 ARRDC3Q96B67 414 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 KLHDC7BQ96G42 594 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 CRELD1Q96HD1 420 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 NPY6RQ99463 290 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 SPON2Q9BUD6 331 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 NDST4Q9H3R1 872 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 ERVMER34-1Q9H9K5 563 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 DKK4Q9UBT3 224 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 HS3ST2Q9Y278 367 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 TBC1D30Q9Y2I9 924 aa14.86□□□□□ -0.03
SDC1-204ENST00000429035 A0A0D9SEW6 157 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 C10orf142B7Z368 130 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 E9PAM4 449 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 FFAR2O15552 330 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 SRGAP2O75044 1071 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 CYP11B1P15538 503 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 OR1E1P30953 314 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 AKT2P31751 481 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 RXRGP48443 463 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 CXCR3P49682 368 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 VASPP50552 380 aaPredicted RBP14.85□□□□□ -0.03
SDC1-204ENST00000429035 DNA2P51530 1060 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 TAS2R38P59533 333 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 BPIFB4P59827 614 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 TARDBPQ13148 414 aaKnown RBP eCLIP14.85□□□□□ -0.03
SDC1-204ENST00000429035 VWA3BQ502W6 1294 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 SFMBT2Q5VUG0 894 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 PTAR1Q7Z6K3 402 aaPredicted RBP14.85□□□□□ -0.03
SDC1-204ENST00000429035 IQCHQ86VS3 1027 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 ERICH1Q86X53 443 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 FAM71AQ8IYT1 594 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 MSANTD4Q8NCY6 345 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 FAM131CQ96AQ9 280 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 C18orf8Q96DM3 657 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 TUBGCP2Q9BSJ2 902 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 SCUBE2Q9NQ36 999 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 METTL5Q9NRN9 209 aaKnown RBP14.85□□□□□ -0.03
SDC1-204ENST00000429035 IL36AQ9UHA7 158 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 SHROOM3Q8TF72 1996 aa14.85□□□□□ -0.03
SDC1-204ENST00000429035 I6L893 689 aaPredicted RBP14.84□□□□□ -0.03
SDC1-204ENST00000429035 SMAD6O43541 496 aaKnown RBP14.84□□□□□ -0.03
SDC1-204ENST00000429035 PRNPP04156 253 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 C1SP09871 688 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 CKMT2P17540 419 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 FLT3P36888 993 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 CLDN2P57739 230 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 CCDC15Q0P6D6 951 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 OVGP1Q12889 678 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 MAPK8IP2Q13387 824 aaPredicted RBP14.84□□□□□ -0.03
SDC1-204ENST00000429035 DPCR1Q3MIW9 517 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 ARSIQ5FYB1 569 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 FBXL19Q6PCT2 694 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 TMC6Q7Z403 805 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 SETD3Q86TU7 594 aaPredicted RBP14.84□□□□□ -0.03
SDC1-204ENST00000429035 HORMAD1Q86X24 394 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 FAM131BQ86XD5 332 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 XYLT1Q86Y38 959 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 DRC7Q8IY82 874 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 OR2A12Q8NGT7 310 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 PPP1R16AQ96I34 528 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 CFAP57Q96MR6 1250 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 ATP13A1Q9HD20 1204 aa14.84□□□□□ -0.03
SDC1-204ENST00000429035 RNF103O00237 685 aa14.83□□□□□ -0.04
SDC1-204ENST00000429035 SIGLEC6O43699 453 aa14.83□□□□□ -0.04
SDC1-204ENST00000429035 LEFTY1O75610 366 aa14.83□□□□□ -0.04
SDC1-204ENST00000429035 F9P00740 461 aa14.83□□□□□ -0.04
SDC1-204ENST00000429035 CDK4P11802 303 aa14.83□□□□□ -0.04
SDC1-204ENST00000429035 HNRNPA2B1P22626 353 aaKnown RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms