RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 ILF3Q12906 894 aaKnown RBP eCLIP5.05□□□□□ -1.6
LINC01040-201ENST00000425048 RBM39Q14498 530 aaKnown RBP5.05□□□□□ -1.6
LINC01040-201ENST00000425048 ZACNQ401N2 412 aa5.05□□□□□ -1.6
LINC01040-201ENST00000425048 ADGRG7Q96K78 797 aa5.05□□□□□ -1.6
LINC01040-201ENST00000425048 NPAS1Q99742 590 aa5.05□□□□□ -1.6
LINC01040-201ENST00000425048 MECRQ9BV79 373 aa5.05□□□□□ -1.6
LINC01040-201ENST00000425048 CDH22Q9UJ99 828 aa5.05□□□□□ -1.6
LINC01040-201ENST00000425048 CNTN6Q9UQ52 1028 aa5.05□□□□□ -1.6
LINC01040-201ENST00000425048 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.04□□□□□ -1.6
LINC01040-201ENST00000425048 MBD3L5A6NJ08 208 aaPredicted RBP5.04□□□□□ -1.6
LINC01040-201ENST00000425048 EYA2O00167 538 aa5.04□□□□□ -1.6
LINC01040-201ENST00000425048 NCK2O43639 380 aa5.04□□□□□ -1.6
LINC01040-201ENST00000425048 NPPBP16860 134 aa5.04□□□□□ -1.6
LINC01040-201ENST00000425048 C21orf33P30042 268 aaPredicted RBP5.04□□□□□ -1.6
LINC01040-201ENST00000425048 AKT1P31749 480 aa5.04□□□□□ -1.6
LINC01040-201ENST00000425048 CXCR3P49682 368 aa5.04□□□□□ -1.6
LINC01040-201ENST00000425048 RETSATQ6NUM9 610 aa5.04□□□□□ -1.6
LINC01040-201ENST00000425048 WDR75Q8IWA0 830 aaKnown RBP5.04□□□□□ -1.6
LINC01040-201ENST00000425048 TEX45Q8NA69 505 aa5.04□□□□□ -1.6
LINC01040-201ENST00000425048 Q9N2J8 555 aa5.04□□□□□ -1.6
LINC01040-201ENST00000425048 FAM50BQ9Y247 325 aa5.04□□□□□ -1.6
LINC01040-201ENST00000425048 TMEM247A6NEH6 219 aa5.03□□□□□ -1.6
LINC01040-201ENST00000425048 TNFSF4P23510 183 aa5.03□□□□□ -1.6
LINC01040-201ENST00000425048 PRKCHP24723 683 aa5.03□□□□□ -1.6
LINC01040-201ENST00000425048 SF3A3Q12874 501 aaKnown RBP eCLIP5.03□□□□□ -1.6
LINC01040-201ENST00000425048 COBLL1Q53SF7 1204 aa5.03□□□□□ -1.6
LINC01040-201ENST00000425048 HIST2H2BCQ6DN03 193 aa5.03□□□□□ -1.6
LINC01040-201ENST00000425048 POC1AQ8NBT0 407 aa5.03□□□□□ -1.6
LINC01040-201ENST00000425048 NEXN-AS1Q8NBZ9 246 aa5.03□□□□□ -1.6
LINC01040-201ENST00000425048 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.03□□□□□ -1.6
LINC01040-201ENST00000425048 SEL1LQ9UBV2 794 aa5.03□□□□□ -1.6
LINC01040-201ENST00000425048 SLC25A13Q9UJS0 675 aa5.03□□□□□ -1.6
LINC01040-201ENST00000425048 IGLV5-37A0A075B6J1 123 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 SAA2-SAA4A0A096LPE2 208 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 SLC38A8A6NNN8 435 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 PIP5K1BO14986 540 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 RNMTO43148 476 aaKnown RBP5.02□□□□□ -1.61
LINC01040-201ENST00000425048 DNPH1O43598 174 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 LMX1BO60663 402 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 SERPINB2P05120 415 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 RFC1P35251 1148 aaPredicted RBP5.02□□□□□ -1.61
LINC01040-201ENST00000425048 PCP4P48539 62 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 PEX5P50542 639 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 RCAN1P53805 252 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 PMS2CLQ68D20 193 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 ADAM5Q6NVV9 412 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 DCUN1D3Q8IWE4 304 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 LMNTD1Q8N9Z9 388 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 ABHD16BQ9H3Z7 469 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 GAREM1Q9H706 876 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 LIN7CQ9NUP9 197 aaKnown RBP5.02□□□□□ -1.61
LINC01040-201ENST00000425048 TMEM248Q9NWD8 314 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 PCDHA10Q9Y5I2 948 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 MST1RQ04912 1400 aa5.02□□□□□ -1.61
LINC01040-201ENST00000425048 MAGEA13PA6NCF6 341 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 PRPH2P23942 346 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 CLCNKBP51801 687 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 SNTA1Q13424 505 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 SAFBQ15424 915 aaKnown RBP eCLIP5.01□□□□□ -1.61
LINC01040-201ENST00000425048 MTFR2Q6P444 385 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 ZNF771Q7L3S4 317 aaPredicted RBP5.01□□□□□ -1.61
LINC01040-201ENST00000425048 SERPINA11Q86U17 422 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 HDAC7Q8WUI4 952 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 FAR1Q8WVX9 515 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 HMGB4Q8WW32 186 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 IL17FQ96PD4 163 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 PRPF18Q99633 342 aaKnown RBP5.01□□□□□ -1.61
LINC01040-201ENST00000425048 NAA15Q9BXJ9 866 aaKnown RBP5.01□□□□□ -1.61
LINC01040-201ENST00000425048 HDHD5Q9BXW7 423 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 MALT1Q9UDY8 824 aa5.01□□□□□ -1.61
LINC01040-201ENST00000425048 AGAP5A6NIR3 686 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 MMP3P08254 477 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 FCGR2AP12318 317 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 GSTM2P28161 218 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 HSPA7P48741 367 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 MYBPC2Q14324 1141 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 CCDC6Q16204 474 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 KRT71Q3SY84 523 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 SYTL3Q4VX76 610 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 TMEM268Q5VZI3 342 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 NAGSQ8N159 534 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 IPO4Q8TEX9 1081 aaKnown RBP5□□□□□ -1.61
LINC01040-201ENST00000425048 TXNDC15Q96J42 360 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 FRG2BQ96QU4 278 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 TRIM31Q9BZY9 425 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 TP63Q9H3D4 680 aaPredicted RBP5□□□□□ -1.61
LINC01040-201ENST00000425048 PDE11AQ9HCR9 933 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 SLC45A1Q9Y2W3 748 aa5□□□□□ -1.61
LINC01040-201ENST00000425048 A0A1B0GVM2 712 aa4.99□□□□□ -1.61
LINC01040-201ENST00000425048 PLA2G6O60733 806 aa4.99□□□□□ -1.61
LINC01040-201ENST00000425048 TYK2P29597 1187 aa4.99□□□□□ -1.61
LINC01040-201ENST00000425048 MXI1P50539 228 aa4.99□□□□□ -1.61
LINC01040-201ENST00000425048 ARL16Q0P5N6 197 aa4.99□□□□□ -1.61
LINC01040-201ENST00000425048 MYBPHQ13203 477 aa4.99□□□□□ -1.61
LINC01040-201ENST00000425048 ALKBH1Q13686 389 aaKnown RBP4.99□□□□□ -1.61
LINC01040-201ENST00000425048 MPEG1Q2M385 716 aa4.99□□□□□ -1.61
LINC01040-201ENST00000425048 TBRG1Q3YBR2 411 aa4.99□□□□□ -1.61
LINC01040-201ENST00000425048 STPG1Q5TH74 334 aa4.99□□□□□ -1.61
LINC01040-201ENST00000425048 IZUMO3Q5VZ72 239 aa4.99□□□□□ -1.61
LINC01040-201ENST00000425048 ANKRD44Q8N8A2 993 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms