RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 TAF4BQ92750 862 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 ELP4Q96EB1 424 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 KLHL15Q96M94 604 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 ATP6V0BQ99437 205 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 IFIH1Q9BYX4 1025 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 TRIM31Q9BZY9 425 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 PANK3Q9H999 370 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 IL23AQ9NPF7 189 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 PAK6Q9NQU5 681 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 COMMD8Q9NX08 183 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 VSX1Q9NZR4 365 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 ZNF70Q9UC06 446 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 LIMA1Q9UHB6 759 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 SLC12A4Q9UP95 1085 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 FAM169AQ9Y6X4 670 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 PLXNA1Q9UIW2 1896 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 FOCADQ5VW36 1801 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 ADM5C9JUS6 153 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 CDC14BO60729 498 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 SLU7O95391 586 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 AZGP1P25311 298 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 GATMP50440 423 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 ZNF41P51814 821 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 FKBP1AP62942 108 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 SATB1Q01826 763 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 RRS1Q15050 365 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 NPY5RQ15761 445 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 SLC9C1Q4G0N8 1177 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 ZNF805Q5CZA5 627 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 ZNF667Q5HYK9 610 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 SLC9A4Q6AI14 798 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 GPR139Q6DWJ6 353 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 IRGCQ6NXR0 463 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 NFXL1Q6ZNB6 911 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 PIK3AP1Q6ZUJ8 805 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 C1orf186Q6ZWK4 172 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 PLPPR4Q7Z2D5 763 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 IGDCC3Q8IVU1 814 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 CFAP52Q8N1V2 620 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 AOPEPQ8N6M6 819 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 SHCBP1Q8NEM2 672 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 GOT1L1Q8NHS2 421 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 NKD2Q969F2 451 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 SDCCAG3Q96C92 435 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 RNFT2Q96EX2 444 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 GBP5Q96PP8 586 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 SRSF8Q9BRL6 282 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 TPSD1Q9BZJ3 242 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 TRIM5Q9C035 493 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 R3HDMLQ9H3Y0 253 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 LIN28AQ9H9Z2 209 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 CYP4F11Q9HBI6 524 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 TM7SF3Q9NS93 570 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 CALCOCO1Q9P1Z2 691 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 DNAJB11Q9UBS4 358 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 SEL1LQ9UBV2 794 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 MAP3K2Q9Y2U5 619 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 RAD54BQ9Y620 910 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 ATRNL1Q5VV63 1379 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 TEX13CA0A0J9YWL9 993 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 CCDC78A2IDD5 438 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 VWA5AO00534 786 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 MPHOSPH10O00566 681 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 SH2B2O14492 632 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 TP73O15350 636 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 GGPS1O95749 300 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 FTH1P19P0C7X4 201 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 DNASE1P24855 282 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 PRKAR1BP31321 381 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 CLNS1AP54105 237 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 TRADDQ15628 312 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 BAK1Q16611 211 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 RNF151Q2KHN1 245 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 SLC5A9Q2M3M2 681 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 KBTBD12Q3ZCT8 623 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 SLC9B1Q4ZJI4 515 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 IGSF11Q5DX21 431 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 RBM20Q5T481 1227 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 LCE2AQ5TA79 106 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 FAM160B1Q5W0V3 765 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 ALKBH5Q6P6C2 394 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 PIWIL3Q7Z3Z3 882 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 CLEC14AQ86T13 490 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 NBPF5PQ86XG9 351 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 TDRPQ86YL5 185 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 SLC15A3Q8IY34 581 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 NUP93Q8N1F7 819 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 PLD5Q8N7P1 536 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 NEK11Q8NG66 645 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 SCFD2Q8WU76 684 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 ZCCHC14Q8WYQ9 949 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 CCDC114Q96M63 670 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 NR1H4Q96RI1 486 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 WDR24Q96S15 920 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 GPHA2Q96T91 129 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 C11orf84Q9BUA3 381 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 EPB41L4BQ9H329 900 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 LIN7CQ9NUP9 197 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 DNMT3BQ9UBC3 853 aaKnown RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 FETUBQ9UGM5 382 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms