RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 RAD9AQ99638 391 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 INO80BQ9C086 356 aaPredicted RBP6.89□□□□□ -1.31
USP40-202ENST00000409945 UNC45AQ9H3U1 944 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 TRPM5Q9NZQ8 1165 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 PADI4Q9UM07 663 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 GINS2Q9Y248 185 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 INSL6Q9Y581 213 aa6.89□□□□□ -1.31
USP40-202ENST00000409945 IGSF9BQ9UPX0 1349 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 AQP12BA6NM10 295 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 RPS6KA5O75582 802 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 NCR1O76036 304 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 SCAF4O95104 1147 aaKnown RBP6.88□□□□□ -1.31
USP40-202ENST00000409945 STAG3L1P0CL83 205 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 GHRP10912 638 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 FOSL2P15408 326 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 NR4A1P22736 598 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 MGAT1P26572 445 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 POU6F2P78424 691 aaPredicted RBP6.88□□□□□ -1.31
USP40-202ENST00000409945 GUCY1B3Q02153 619 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 LONRF3Q496Y0 759 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 NCAPH2Q6IBW4 605 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 Q7L0L9 218 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 RNF44Q7L0R7 432 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.88□□□□□ -1.31
USP40-202ENST00000409945 ETNPPLQ8TBG4 499 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 SPSB4Q96A44 273 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 CTAGE1Q96RT6 745 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 YME1L1Q96TA2 773 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 CNPPD1Q9BV87 410 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 KCNMB3Q9NPA1 279 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 MTMR10Q9NXD2 777 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 IGSF9Q9P2J2 1179 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 EIF2B4Q9UI10 523 aaKnown RBP6.88□□□□□ -1.31
USP40-202ENST00000409945 MORC2Q9Y6X9 1032 aaPredicted RBP6.88□□□□□ -1.31
USP40-202ENST00000409945 KDM3AQ9Y4C1 1321 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 DENND3A2RUS2 1198 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 FOXN3O00409 490 aaPredicted RBP6.88□□□□□ -1.31
USP40-202ENST00000409945 SLC37A4O43826 429 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 HSP90AA1P07900 732 aaKnown RBP6.88□□□□□ -1.31
USP40-202ENST00000409945 MCM7P33993 719 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 HALP42357 657 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 MAN2A2P49641 1150 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 NPY5RQ15761 445 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 PTCHD3Q3KNS1 767 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 HAUS3Q68CZ6 603 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 HSCBQ8IWL3 235 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 IPO4Q8TEX9 1081 aaKnown RBP6.88□□□□□ -1.31
USP40-202ENST00000409945 TCP11Q8WWU5 503 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 SNX21Q969T3 373 aa6.88□□□□□ -1.31
USP40-202ENST00000409945 TTC12Q9H892 705 aaPredicted RBP6.88□□□□□ -1.31
USP40-202ENST00000409945 LAD1O00515 517 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 ADAMTS3O15072 1205 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 CREB3O43889 395 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 GJB5O95377 273 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 CHRNA1P02708 482 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 THP07101 528 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 PDHA1P08559 390 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 GABRB3P28472 473 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 CRYBB1P53674 252 aaPredicted RBP6.87□□□□□ -1.31
USP40-202ENST00000409945 POLGP54098 1239 aaPredicted RBP6.87□□□□□ -1.31
USP40-202ENST00000409945 NCBP1Q09161 790 aaKnown RBP6.87□□□□□ -1.31
USP40-202ENST00000409945 SCN5AQ14524 2016 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 ELF2Q15723 593 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 RILPL1Q5EBL4 403 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 FBXO47Q5MNV8 452 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 MARCH8Q5T0T0 291 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 LIN54Q6MZP7 749 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 GDF7Q7Z4P5 450 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 POC1BQ8TC44 478 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 CPT1CQ8TCG5 803 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 TRAPPC12Q8WVT3 735 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 CEP170P1Q96L14 293 aa6.87□□□□□ -1.31
USP40-202ENST00000409945 LAMA3Q16787 3333 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 MBD3L4A6NDZ8 208 aaPredicted RBP6.86□□□□□ -1.31
USP40-202ENST00000409945 MBD3L3A6NE82 208 aaPredicted RBP6.86□□□□□ -1.31
USP40-202ENST00000409945 MARCH11A6NNE9 402 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 MYO1CO00159 1063 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 ASAP2O43150 1006 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 C22orf31O95567 290 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 CA3P07451 260 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 OR52Z1P0C646 297 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 BTF3P20290 206 aaKnown RBP6.86□□□□□ -1.31
USP40-202ENST00000409945 SFPQP23246 707 aaKnown RBP eCLIP6.86□□□□□ -1.31
USP40-202ENST00000409945 GJB2P29033 226 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 SLC25A3Q00325 362 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 HHEXQ03014 270 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 LPIN1Q14693 890 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 XKR9Q5GH70 373 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 SUGP1Q8IWZ8 645 aaKnown RBP6.86□□□□□ -1.31
USP40-202ENST00000409945 C4orf19Q8IY42 314 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 SYTL1Q8IYJ3 562 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 AOPEPQ8N6M6 819 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 ZNF566Q969W8 418 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 TGS1Q96RS0 853 aaKnown RBP6.86□□□□□ -1.31
USP40-202ENST00000409945 CDX2Q99626 313 aaPredicted RBP6.86□□□□□ -1.31
USP40-202ENST00000409945 LXNQ9BS40 222 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 GCOM2Q9BZD3 368 aaPredicted RBP6.86□□□□□ -1.31
USP40-202ENST00000409945 GRHPRQ9UBQ7 328 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 ZNF212Q9UDV6 495 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 PCDHB7Q9Y5E2 793 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms