RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 POPDC2Q9HBU9 364 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 RBM22Q9NW64 420 aaKnown RBP eCLIP6.19□□□□□ -1.421e-6■■■■■ 27.8
SCN1A-203ENST00000409050 RHBDL2Q9NX52 303 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 NFKBIL1Q9UBC1 381 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 DNAJB4Q9UDY4 337 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 TRIM10Q9UDY6 481 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 SPATA2Q9UM82 520 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 PTCH2Q9Y6C5 1203 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ARHGAP23Q9P227 1491 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 TEX46H3BTG2 121 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 HDAC3O15379 428 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 DHFRP00374 187 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 MBL2P11226 248 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 FGFR1P11362 822 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 OR1G1P47890 313 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 CASP4P49662 377 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 CDK9P50750 372 aaKnown RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 RPS6P62753 249 aaKnown RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 POU5F1Q01860 360 aaKnown RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 SLC15A2Q16348 729 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 FSCN1Q16658 493 aaKnown RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 TCEAL5Q5H9L2 206 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 LMBRD2Q68DH5 695 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 TRIM40Q6P9F5 258 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 KLHL17Q6TDP4 642 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 STRADAQ7RTN6 431 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 PLEKHH3Q7Z736 793 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 FCGR1BQ92637 280 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 DDX17Q92841 729 aaKnown RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 TP53INP1Q96A56 240 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 SYT15Q9BQS2 421 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 RHOBTB2Q9BYZ6 727 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 KIAA1683Q9H0B3 1180 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 VPS45Q9NRW7 570 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 MRTO4Q9UKD2 239 aaKnown RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 AGLP35573 1532 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 GAKO14976 1311 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ABCA6Q8N139 1617 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 C1orf232A0A0U1RR37 186 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 FAM170AA1A519 330 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 OTCP00480 354 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 JCHAINP01591 159 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 FTH1P02794 183 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 GSTM1P09488 218 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 TBX4P57082 545 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 BTKQ06187 659 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 FAM189A2Q15884 450 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 LACTB2Q53H82 288 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SGO1Q5FBB7 561 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 DENND5AQ6IQ26 1287 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 MFSD5Q6N075 450 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 AGMOQ6ZNB7 445 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SV2AQ7L0J3 742 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SH3RF1Q7Z6J0 888 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 STK32CQ86UX6 486 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ANKHQ9HCJ1 492 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 IFT80Q9P2H3 777 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ATXN10Q9UBB4 475 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 LIMD1Q9UGP4 676 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 GGT7Q9UJ14 662 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SAMD4AQ9UPU9 718 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 INVSQ9Y283 1065 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SH3GLB1Q9Y371 365 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 NFASCO94856 1347 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 INPP4BO15327 924 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 IFNGP01579 166 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 NR2F6P10588 404 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ITGAXP20702 1163 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ACO1P21399 889 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SERPINA4P29622 427 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 DCCP43146 1447 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 MAPKAPK2P49137 400 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 MARSP56192 900 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 GPSM1Q86YR5 675 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 GRPEL2Q8TAA5 225 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF606Q8WXB4 792 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ART4Q93070 314 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 TLR10Q9BXR5 811 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ACSS3Q9H6R3 686 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 MID1IP1Q9NPA3 183 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 FKBP14Q9NWM8 211 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 CPS1P31327 1500 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 NWD1Q149M9 1564 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SYNDIG1LA6NDD5 238 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 METTL21EPA6NDL7 271 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 GRAP2O75791 330 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 CPSF4O95639 269 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 VIL1P09327 827 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 DNAJB1P25685 340 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 NOS3P29474 1203 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 MMP13P45452 471 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 CENPAP49450 140 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 OVGP1Q12889 678 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 PTP4A2Q12974 167 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 PRKG2Q13237 762 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SCARF1Q14162 830 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 DPYSL3Q14195 570 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 PTPRNQ16849 979 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 BMT2Q1RMZ1 405 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 C5orf22Q49AR2 442 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms