RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ARL13BQ3SXY8 428 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 AASDHQ4L235 1098 aaPredicted RBP9.46□□□□□ -0.9
VPS53-203ENST00000401468 BOLA3Q53S33 107 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 FYB2Q5VWT5 728 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 TXNRD3NBQ6F5E7 133 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 CACUL1Q86Y37 369 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 DENND1CQ8IV53 801 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 SYCE1Q8N0S2 351 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 PGBD3Q8N328 593 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 TSTD1Q8NFU3 115 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 TRIM58Q8NG06 486 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 FAF2Q96CS3 445 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 HES6Q96HZ4 224 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 PRICKLE1Q96MT3 831 aaPredicted RBP9.46□□□□□ -0.9
VPS53-203ENST00000401468 OCSTAMPQ9BR26 566 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 DUSP15Q9H1R2 295 aaPredicted RBP9.46□□□□□ -0.9
VPS53-203ENST00000401468 LZTFL1Q9NQ48 299 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 TMPRSS4Q9NRS4 437 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 DLL3Q9NYJ7 618 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 RCOR3Q9P2K3 495 aaPredicted RBP9.46□□□□□ -0.9
VPS53-203ENST00000401468 SLC12A6Q9UHW9 1150 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 LSM7Q9UK45 103 aaKnown RBP9.46□□□□□ -0.9
VPS53-203ENST00000401468 FBXO10Q9UK96 956 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 HCN2Q9UL51 889 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 GUCA1BQ9UMX6 200 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 AP4E1Q9UPM8 1137 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 RAD54BQ9Y620 910 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 HS3ST4Q9Y661 456 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 CACNA1EQ15878 2313 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 ZFYVE26Q68DK2 2539 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 PTPRBP23467 1997 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 SHROOM3Q8TF72 1996 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 PCDH15Q96QU1 1955 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 FLNBO75369 2602 aaKnown RBP9.46□□□□□ -0.9
VPS53-203ENST00000401468 SYNJ2BP-COX16A0A087WUM0 186 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 TCRBV21S2A2A0A5A6 115 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 WASH4PA8MWX3 477 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 WASH3PC4AMC7 463 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 ADAM23O75077 832 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 TULP3O75386 442 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 PAPSS2O95340 614 aaPredicted RBP9.45□□□□□ -0.9
VPS53-203ENST00000401468 APBB3O95704 486 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 APODP05090 189 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 RETP07949 1114 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 KRT7P08729 469 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 RARAP10276 462 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 TACR2P21452 398 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 IL4RP24394 825 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 AUHQ13825 339 aaKnown RBP9.45□□□□□ -0.9
VPS53-203ENST00000401468 CA9Q16790 459 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 HADHQ16836 314 aaKnown RBP9.45□□□□□ -0.9
VPS53-203ENST00000401468 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.45□□□□□ -0.9
VPS53-203ENST00000401468 PLK5Q496M5 336 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 TTC39BQ5VTQ0 682 aaPredicted RBP9.45□□□□□ -0.9
VPS53-203ENST00000401468 EGFLAMQ63HQ2 1017 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 FBXL22Q6P050 247 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 C1orf228Q6PIY5 440 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 Q6ZVU0 165 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 DAAM2Q86T65 1068 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 RHOT1Q8IXI2 618 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 ETFBKMTQ8IXQ9 262 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 TMEFF1Q8IYR6 380 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 KATNAL2Q8IYT4 538 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 PHTF2Q8N3S3 785 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 SYNPOQ8N3V7 929 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 IL17RCQ8NAC3 791 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 MYEOVQ96EZ4 313 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 PNKPQ96T60 521 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 DDX50Q9BQ39 737 aaKnown RBP9.45□□□□□ -0.9
VPS53-203ENST00000401468 IER2Q9BTL4 223 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 BBS2Q9BXC9 721 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 GOLPH3Q9H4A6 298 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 SPHK2Q9NRA0 654 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 DNAJC17Q9NVM6 304 aaKnown RBP9.45□□□□□ -0.9
VPS53-203ENST00000401468 COX16Q9P0S2 106 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 BCCIPQ9P287 314 aaKnown RBP eCLIP9.45□□□□□ -0.9
VPS53-203ENST00000401468 OR12D3Q9UGF7 316 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 PCDHA3Q9Y5H8 950 aa9.45□□□□□ -0.9
VPS53-203ENST00000401468 SPEGQ15772 3267 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 CCDC66A2RUB6 948 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 TBC1D3BA6NDS4 549 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 FIGNL2A6NMB9 653 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 MIF4GDA9UHW6 222 aaKnown RBP9.44□□□□□ -0.9
VPS53-203ENST00000401468 E9PAM4 449 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 FAM72CH0Y354 149 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 DDX3YO15523 660 aaKnown RBP9.44□□□□□ -0.9
VPS53-203ENST00000401468 CACNG3O60359 315 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 ATG13O75143 517 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 LRIG2O94898 1065 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 TYRP14679 529 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 LORP23490 312 aaPredicted RBP9.44□□□□□ -0.9
VPS53-203ENST00000401468 HOXD9P28356 352 aaPredicted RBP9.44□□□□□ -0.9
VPS53-203ENST00000401468 MPLP40238 635 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 EIF2DP41214 584 aaKnown RBP9.44□□□□□ -0.9
VPS53-203ENST00000401468 DHPSP49366 369 aaPredicted RBP9.44□□□□□ -0.9
VPS53-203ENST00000401468 SGSHP51688 502 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 AMPD2Q01433 879 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 LMNB2Q03252 620 aa9.44□□□□□ -0.9
VPS53-203ENST00000401468 DPYSQ14117 519 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms