RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 TMEM130Q8N3G9 435 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 PQLC3Q8N755 202 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 NFKBIZQ9BYH8 718 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 CYLDQ9NQC7 956 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 RGS18Q9NS28 235 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 TMEM216Q9P0N5 145 aa18.83■□□□□ 0.61
USP48-204ENST00000400301 FCGRTP55899 365 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 INSCQ1MX18 579 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 SLC22A9Q8IVM8 553 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 CXorf38Q8TB03 319 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 FBXO44Q9H4M3 255 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 ZNF395Q9H8N7 513 aaPredicted RBP18.83■□□□□ 0.6
USP48-204ENST00000400301 TRPC7Q9HCX4 862 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 SOAT2O75908 522 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 TPBGLP0DKB5 382 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 CAAP1Q9H8G2 361 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 FZD10Q9ULW2 581 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 CRYL1Q9Y2S2 319 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 RAP2CQ9Y3L5 183 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 LAMB2P55268 1798 aa18.83■□□□□ 0.6
USP48-204ENST00000400301 NR5A2O00482 541 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 FGF10O15520 208 aaPredicted RBP18.82■□□□□ 0.6
USP48-204ENST00000400301 AP2A1O95782 977 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 EML3Q32P44 896 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 OTOP3Q7RTS5 596 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 RAET1EQ8TD07 263 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 GPR63Q9BZJ6 419 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 WDR55Q9H6Y2 383 aaPredicted RBP18.82■□□□□ 0.6
USP48-204ENST00000400301 COG4Q9H9E3 785 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 LATS2Q9NRM7 1088 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 FBXO5Q9UKT4 447 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 V9GYQ6 96 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 TM7SF2O76062 418 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 OR1E1P30953 314 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 SLC11A2P49281 568 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 SERPINH1P50454 418 aaKnown RBP18.82■□□□□ 0.6
USP48-204ENST00000400301 FASTKQ14296 549 aaKnown RBP18.82■□□□□ 0.6
USP48-204ENST00000400301 RNF180Q86T96 592 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 OR6Y1Q8NGX8 325 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 BHMTQ93088 406 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 ABTB1Q969K4 478 aaPredicted RBP18.82■□□□□ 0.6
USP48-204ENST00000400301 AZIN2Q96A70 460 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 NDNQ99608 321 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 TRMT6Q9UJA5 497 aaKnown RBP18.82■□□□□ 0.6
USP48-204ENST00000400301 MYBPHLA2RUH7 354 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 SCNN1BP51168 640 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 AIF1P55008 147 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 PDE1CQ14123 709 aaPredicted RBP18.82■□□□□ 0.6
USP48-204ENST00000400301 PTRHD1Q6GMV3 140 aaKnown RBP18.82■□□□□ 0.6
USP48-204ENST00000400301 ZNF333Q96JL9 665 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 CCT7Q99832 543 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 RNF39Q9H2S5 420 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 SFMBT1Q9UHJ3 866 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 PCDHB5Q9Y5E4 795 aa18.82■□□□□ 0.6
USP48-204ENST00000400301 C2orf81A6NN90 581 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 YJEFN3A6XGL0 299 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 RPLP2P05387 115 aaKnown RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 SERPINF2P08697 491 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 FAM110CQ1W6H9 321 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 MARK2Q7KZI7 788 aaKnown RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 NRBF2Q96F24 287 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 CDH19Q9H159 772 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 RHOJQ9H4E5 214 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 SNX10Q9Y5X0 201 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 TMEM114B3SHH9 223 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 BUD23O43709 281 aaKnown RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 CABYRO75952 493 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 CCDC166P0CW27 439 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 POU4F1Q01851 419 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 PLOD1Q02809 727 aaPredicted RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 RAD51Q06609 339 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 ZNF177Q13360 481 aaPredicted RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 SYPL2Q5VXT5 272 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 LIPMQ5VYY2 423 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 SLC9A4Q6AI14 798 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 PCDH20Q8N6Y1 951 aaKnown RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 FCRL2Q96LA5 508 aaPredicted RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 GCNAQ96QF7 691 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 WDR41Q9HAD4 459 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 PAPOLBQ9NRJ5 636 aaKnown RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 STX18Q9P2W9 335 aaKnown RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 NRAPQ86VF7 1730 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 LRIG2O94898 1065 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 HOXD10P28358 340 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 RAB10P61026 200 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 SLC18A2Q05940 514 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 POLD3Q15054 466 aaPredicted RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 NCBP2-AS2Q69YL0 99 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 DDX50Q9BQ39 737 aaKnown RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 EBF4Q9BQW3 602 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 RAD54BQ9Y620 910 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 SIN3BO75182 1162 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 USP1O94782 785 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 PTPN3P26045 913 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 CD52P31358 61 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 HSPA13P48723 471 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 ARHGEF6Q15052 776 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 NAIF1Q69YI7 327 aaPredicted RBP18.81■□□□□ 0.6
USP48-204ENST00000400301 ZNF280DQ6N043 979 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms