RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 DPYSL2Q16555 572 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 TRNP1Q6NT89 227 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 TTC33Q6PID6 262 aaPredicted RBP16.4■□□□□ 0.22
PCDH1-203ENST00000394536 GK5Q6ZS86 529 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 LINC00523Q86TU6 105 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 NEMP2A6NFY4 417 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 C9JVG2 144 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 NPR3P17342 541 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 XRCC1P18887 633 aaPredicted RBP16.4■□□□□ 0.22
PCDH1-203ENST00000394536 ADRA1BP35368 520 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 PNPLA4P41247 253 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 RPL5P46777 297 aaKnown RBP16.4■□□□□ 0.22
PCDH1-203ENST00000394536 MAPK10P53779 464 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 PHEXP78562 749 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 SLC9A4Q6AI14 798 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 UNC93AQ86WB7 457 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 IFT43Q96FT9 208 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 SPATA16Q9BXB7 569 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 RNF181Q9P0P0 153 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 SUN2Q9UH99 717 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 ADAMTS6Q9UKP5 1117 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 CRYL1Q9Y2S2 319 aa16.4■□□□□ 0.22
PCDH1-203ENST00000394536 COL16A1Q07092 1604 aaPredicted RBP16.4■□□□□ 0.22
PCDH1-203ENST00000394536 MT-CYBP00156 380 aaPredicted RBP16.39■□□□□ 0.21
PCDH1-203ENST00000394536 AOC1P19801 751 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 CYP3A5P20815 502 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 NMBRP28336 390 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 THOP1P52888 689 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 CDH13P55290 713 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 NXNL1Q96CM4 212 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 MRPL46Q9H2W6 279 aaKnown RBP16.39■□□□□ 0.21
PCDH1-203ENST00000394536 PPME1Q9Y570 386 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 NCF1BA6NI72 391 aaPredicted RBP16.39■□□□□ 0.21
PCDH1-203ENST00000394536 NCF1CA8MVU1 366 aaPredicted RBP16.39■□□□□ 0.21
PCDH1-203ENST00000394536 HNRNPRO43390 633 aaKnown RBP16.39■□□□□ 0.21
PCDH1-203ENST00000394536 NCF1P14598 390 aaPredicted RBP16.39■□□□□ 0.21
PCDH1-203ENST00000394536 PPARGP37231 505 aaPredicted RBP16.39■□□□□ 0.21
PCDH1-203ENST00000394536 PRAMEF19Q5SWL8 479 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 C9orf57Q5W0N0 161 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 DENND6AQ8IWF6 608 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 ZFP42Q96MM3 310 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 RBBP8Q99708 897 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 PNPLA8Q9NP80 782 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 TCRBV5S1A1TA0A578 114 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 MRASO14807 208 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 TSPAN3O60637 253 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 C22orf31O95567 290 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 IL4RP24394 825 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 CD151P48509 253 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 PSME3P61289 254 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 PPIDQ08752 370 aaKnown RBP16.39■□□□□ 0.21
PCDH1-203ENST00000394536 FOXD4Q12950 439 aaPredicted RBP16.39■□□□□ 0.21
PCDH1-203ENST00000394536 AGAP9Q5VTM2 703 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 TMEM110Q86TL2 294 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 PCYOX1LQ8NBM8 494 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 BLOC1S5Q8TDH9 187 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 SLC35F5Q8WV83 523 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 IL22Q9GZX6 179 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.39■□□□□ 0.21
PCDH1-203ENST00000394536 AAR2Q9Y312 384 aaKnown RBP16.39■□□□□ 0.21
PCDH1-203ENST00000394536 AP4S1Q9Y587 144 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 PCDHB12Q9Y5F1 795 aa16.39■□□□□ 0.21
PCDH1-203ENST00000394536 HEATR9A2RTY3 570 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 TMEM233B4DJY2 109 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 ANXA9O76027 345 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 MLNP12872 115 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 LIMK2P53671 638 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 MPP1Q00013 466 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 TAF12Q16514 161 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 LIPMQ5VYY2 423 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 FAM43BQ6ZT52 329 aaPredicted RBP16.38■□□□□ 0.21
PCDH1-203ENST00000394536 SHKBP1Q8TBC3 707 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 MZB1Q8WU39 189 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 RTKNQ9BST9 563 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 MROH8Q9H579 483 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 STN1Q9H668 368 aaKnown RBP16.38■□□□□ 0.21
PCDH1-203ENST00000394536 NT5MQ9NPB1 228 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 NSMCE4AQ9NXX6 385 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 MAGEB16A2A368 324 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 ZNF839A8K0R7 811 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 ZBBXA8MT70 800 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 NPY2RP49146 381 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 MYO1HQ8N1T3 1032 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 CXorf38Q8TB03 319 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 COMMD3-BMI1R4GMX3 469 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 KCNU1A8MYU2 1149 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 USP2O75604 605 aaPredicted RBP16.38■□□□□ 0.21
PCDH1-203ENST00000394536 TOMM70O94826 608 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 PTPN9P43378 593 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 LPCAT2Q7L5N7 544 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 STRADAQ7RTN6 431 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.38■□□□□ 0.21
PCDH1-203ENST00000394536 RP9Q8TA86 221 aaKnown RBP16.38■□□□□ 0.21
PCDH1-203ENST00000394536 NAT14Q8WUY8 206 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 SDCCAG3Q96C92 435 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 DTNBP1Q96EV8 351 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 CIB1Q99828 191 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 CCDC90BQ9GZT6 254 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 PCDHAC1Q9H158 963 aa16.38■□□□□ 0.21
PCDH1-203ENST00000394536 TXNRD2Q9NNW7 524 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms