RNA–Protein interactions for RNA: ENST00000392128.6

SMARCAL1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SMARCAL1, Length 2,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-203ENST00000392128 AGO1Q9UL18 857 aaKnown RBP11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 SMG5Q9UPR3 1016 aaKnown RBP11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 ZFP37Q9Y6Q3 630 aaPredicted RBP11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 LCHNA4D1U4 455 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 FAM47DPA6NHR8 397 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 CXorf49A8MYA2 514 aaPredicted RBP11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 NEBLO76041 1014 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 LRG1P02750 347 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 POLBP06746 335 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 MBL2P11226 248 aaPredicted RBP11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 MPP2Q14168 576 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 FRG1Q14331 258 aaKnown RBP11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 SPANXN3Q5MJ09 141 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 MARC1Q5VT66 337 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 CHST9Q7L1S5 443 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 CTAGE3PQ8IX95 158 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 PPM1NQ8N819 430 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 SPATA22Q8NHS9 363 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 BCAS4Q8TDM0 211 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 NSMCE1Q8WV22 266 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 PRICKLE1Q96MT3 831 aaPredicted RBP11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 DDX50Q9BQ39 737 aaKnown RBP11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 TCF25Q9BQ70 676 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 IL22Q9GZX6 179 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 SLC25A51Q9H1U9 297 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 PPANQ9NQ55 473 aaKnown RBP11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 UBP1Q9NZI7 540 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 RWDD3Q9Y3V2 267 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 MIA3Q5JRA6 1907 aa11.66□□□□□ -0.54
SMARCAL1-203ENST00000392128 A0A1W2PPM1 405 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 MAGEB16A2A368 324 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 GMNCA6NCL1 334 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 H3BNC9 293 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 CLDN11O75508 207 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 C8AP07357 584 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 CTNNB1P35222 781 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 ERVFC1P60507 584 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 NAB1Q13506 487 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 TTC39BQ5VTQ0 682 aaPredicted RBP11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 TMEM135Q86UB9 458 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 TMC8Q8IU68 726 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 CFAP52Q8N1V2 620 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 TBL1YQ9BQ87 522 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 LRRC3Q9BY71 257 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 MAGEH1Q9H213 219 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 KIF9Q9HAQ2 790 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 ENTPD7Q9NQZ7 604 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 NKIRAS1Q9NYS0 192 aa11.65□□□□□ -0.54
SMARCAL1-203ENST00000392128 C2orf71A6NGG8 1288 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 PRAMEF11O60813 436 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 FAM155BO75949 473 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 USP1O94782 785 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 MT-CYBP00156 380 aaPredicted RBP11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 ADRA1AP35348 466 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 SEC24CP53992 1094 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 NIPAL4Q0D2K0 466 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 SLC10A7Q0GE19 358 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 MPP3Q13368 585 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 MARK2Q7KZI7 788 aaKnown RBP11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 ZNF354CQ86Y25 554 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 CCDC117Q8IWD4 279 aaPredicted RBP11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 MRPL43Q8N983 215 aaKnown RBP11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 KREMEN2Q8NCW0 462 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 CDKL2Q92772 493 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 WBP2Q969T9 261 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 ALKBH8Q96BT7 664 aaKnown RBP11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 PABPC5Q96DU9 382 aaKnown RBP11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 IMP4Q96G21 291 aaKnown RBP11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 SGSM3Q96HU1 749 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 ZNF599Q96NL3 588 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 MTIF3Q9H2K0 278 aaKnown RBP11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 PDFQ9HBH1 243 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 TRPC7Q9HCX4 862 aa11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 ALG13Q9NP73 1137 aaKnown RBP11.65□□□□□ -0.55
SMARCAL1-203ENST00000392128 FAM237BA0A1B0GVD1 139 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 A0A1B0GVM2 712 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 TCAF2A6NFQ2 919 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 ERICH4A6NGS2 130 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 TYROBPO43914 113 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 KRT37O76014 449 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 FAM107AO95990 144 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 GLUD1P00367 558 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 IRF1P10914 325 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 KRT4P19013 534 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 GABRR2P28476 465 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 ACVRL1P37023 503 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 RPS24P62847 133 aaKnown RBP11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 SMAD3P84022 425 aaKnown RBP11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 GNA12Q03113 381 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 UBE3AQ05086 875 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 ZSCAN26Q16670 478 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 LGSNQ5TDP6 509 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 GAREM2Q75VX8 874 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 SETD3Q86TU7 594 aaPredicted RBP11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 C4orf33Q8N1A6 199 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 ELMOD1Q8N336 334 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 ANKRD42Q8N9B4 389 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 SLC22A12Q96S37 553 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 CYP2S1Q96SQ9 504 aa11.64□□□□□ -0.55
SMARCAL1-203ENST00000392128 APOL2Q9BQE5 337 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms