RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 NMD3Q96D46 503 aaKnown RBP16.57■□□□□ 0.24
NKX3-1-201ENST00000380871 RBBP8Q99708 897 aa16.57■□□□□ 0.24
NKX3-1-201ENST00000380871 UBP1Q9NZI7 540 aa16.57■□□□□ 0.24
NKX3-1-201ENST00000380871 C15orf38-AP3S2A0A0A6YYH1 394 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 MBLAC1A4D2B0 266 aaPredicted RBP16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 ZNF487B1APH4 448 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 NCAM1P13591 858 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 THOP1P52888 689 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 DBN1Q16643 649 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 PAOXQ6QHF9 649 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 UGT2A3Q6UWM9 527 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 TMC7Q7Z402 723 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 ARPINQ7Z6K5 226 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 GATA5Q9BWX5 397 aaPredicted RBP16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 UBE2OQ9C0C9 1292 aaKnown RBP16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 TCF7L2Q9NQB0 619 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 NUDT5Q9UKK9 219 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 DERAQ9Y315 318 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 BRCA2P51587 3418 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 CRYBB1P53674 252 aaPredicted RBP16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 FAM219BQ5XKK7 198 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 GPRIN1Q7Z2K8 1008 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 JADE3Q92613 823 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 ANLNQ9NQW6 1124 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 UBAP1Q9NZ09 502 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 KLHL8Q9P2G9 620 aaPredicted RBP16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 PLXNA1Q9UIW2 1896 aa16.56■□□□□ 0.24
NKX3-1-201ENST00000380871 YJEFN3A6XGL0 299 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 CFLARO15519 480 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 XRCC1P18887 633 aaPredicted RBP16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 ALDH1A3P47895 512 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 RPS6KA3P51812 740 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 DNAAF3Q8N9W5 541 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 CPNE1Q99829 537 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 NUF2Q9BZD4 464 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 SIK2Q9H0K1 926 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 GTF2IRD1Q9UHL9 959 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 DTNAQ9Y4J8 743 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 PLXNB2O15031 1838 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 ZCWPW2A0A1B0GU75 182 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 ANKRD33BA6NCL7 494 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 C2P06681 752 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 NPR3P17342 541 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 AVPR1AP37288 418 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 MATKP42679 507 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 BRCC3P46736 316 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 ANKRD20A4Q4UJ75 823 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 DCUN1D1Q96GG9 259 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 DUSP16Q9BY84 665 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 DMAP1Q9NPF5 467 aaPredicted RBP16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 CHRAC1Q9NRG0 131 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 PIGVQ9NUD9 493 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 I6L893 689 aaPredicted RBP16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 PHGDHO43175 533 aaKnown RBP16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 FBXO21O94952 628 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 FAM200BP0CF97 657 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 SMIM18P0DKX4 95 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 HOXD8P13378 290 aaPredicted RBP16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 ARSAP15289 507 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 PIK3R1P27986 724 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 LIMK2P53671 638 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 TRIM32Q13049 653 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 GRM2Q14416 872 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 INSCQ1MX18 579 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 MORN1Q5T089 497 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 CLEC20AQ6ZU45 233 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 PAQR9Q6ZVX9 377 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 SPATA6LQ8N4H0 392 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 FAM156AQ8NDB6 213 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 ICA1LQ8NDH6 482 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 NAT14Q8WUY8 206 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 EPAS1Q99814 870 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 ARHGAP39Q9C0H5 1083 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 CRTAC1Q9NQ79 661 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 DDIT4Q9NX09 232 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 VANGL2Q9ULK5 521 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 SLC45A1Q9Y2W3 748 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 CDY1Q9Y6F8 540 aa16.55■□□□□ 0.24
NKX3-1-201ENST00000380871 DPP6P42658 865 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 SERPINB8P50452 374 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 CHN2P52757 468 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 CDC42EP1Q00587 391 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 LSM12Q3MHD2 195 aaKnown RBP16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 ZDHHC17Q8IUH5 632 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 C3orf58Q8NDZ4 430 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 URGCPQ8TCY9 931 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 USP33Q8TEY7 942 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 RCN3Q96D15 328 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 CDRT15Q96T59 188 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 NDNQ99608 321 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 EIF2B3Q9NR50 452 aaKnown RBP16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 TMEM30AQ9NV96 361 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 NUP205Q92621 2012 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 HACD1B0YJ81 288 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 EEF2KO00418 725 aaKnown RBP16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 B3GAT3O94766 335 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 MYL4P12829 197 aa16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 TCN1P20061 433 aaPredicted RBP16.54■□□□□ 0.24
NKX3-1-201ENST00000380871 GLDCP23378 1020 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms