RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 CDY1Q9Y6F8 540 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 IQANK1A0A1B0GTG1 560 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 UBOX5O94941 541 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 FBXO21O94952 628 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 PAHP00439 452 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 ALDH2P05091 517 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 CNGA3Q16281 694 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 CLPPQ16740 277 aaPredicted RBP11.02□□□□□ -0.65
NEDD9-201ENST00000379433 LHX8Q68G74 356 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 CMC1Q7Z7K0 106 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 FBXO32Q969P5 355 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 PPP1R36Q96LQ0 422 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 CAB39LQ9H9S4 337 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 SMPD4Q9NXE4 827 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 ZFATQ9P243 1243 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 ATP11BQ9Y2G3 1177 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 SNX3O60493 162 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 DNAJC6O75061 913 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 ZNF623O75123 536 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 APOEP02649 317 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 PTPN3P26045 913 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 HNRNPH1P31943 449 aaKnown RBP11.01□□□□□ -0.65
NEDD9-201ENST00000379433 POLD2P49005 469 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 NR2C2P49116 596 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 TAF12Q16514 161 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 C4orf50Q6ZRC1 276 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 ZNF534Q76KX8 674 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 SPATA6LQ8N4H0 392 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 LINC00469Q8N7U9 141 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 KCTD13Q8WZ19 329 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 FOXP3Q9BZS1 431 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 CRISPLD1Q9H336 500 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 CASS4Q9NQ75 786 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 ZNF358Q9NW07 568 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 KLHL14Q9P2G3 628 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 PAIP2BQ9ULR5 123 aaKnown RBP11.01□□□□□ -0.65
NEDD9-201ENST00000379433 USP15Q9Y4E8 981 aaPredicted RBP11.01□□□□□ -0.65
NEDD9-201ENST00000379433 SUN1O94901 812 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 AVPR1AP37288 418 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 CHRNA4P43681 627 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 CXCR3P49682 368 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 TAF10Q12962 218 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 DSC3Q14574 896 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 RTP2Q5QGT7 225 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 EMC10Q5UCC4 262 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 RAP1GAP2Q684P5 730 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 RFWD3Q6PCD5 774 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 RSPO2Q6UXX9 243 aaPredicted RBP11.01□□□□□ -0.65
NEDD9-201ENST00000379433 RASSF3Q86WH2 238 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 ATPAF2Q8N5M1 289 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 SLC2A13Q96QE2 648 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 EBNA1BP2Q99848 306 aaKnown RBP11.01□□□□□ -0.65
NEDD9-201ENST00000379433 FRMD8P1Q9BZ68 369 aaPredicted RBP11.01□□□□□ -0.65
NEDD9-201ENST00000379433 QPCTLQ9NXS2 382 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 USP3Q9Y6I4 520 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 ADAM12O43184 909 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 GJB3O75712 270 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 ABHD2P08910 425 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 PIRTP0C851 137 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 DLG2Q15700 870 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 TCTN1Q2MV58 587 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 TRPM8Q7Z2W7 1104 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 MRPL10Q7Z7H8 261 aaKnown RBP11.01□□□□□ -0.65
NEDD9-201ENST00000379433 VSIG1Q86XK7 387 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 SUSD3Q96L08 255 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 SIGLEC10Q96LC7 697 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 ZNF512Q96ME7 567 aaPredicted RBP11.01□□□□□ -0.65
NEDD9-201ENST00000379433 SRPK1Q96SB4 655 aaKnown RBP11.01□□□□□ -0.65
NEDD9-201ENST00000379433 CCSER2Q9H7U1 834 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 LGALS13Q9UHV8 139 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 MCM8Q9UJA3 840 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 ADAM28Q9UKQ2 775 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 ACTL7AQ9Y615 435 aa11.01□□□□□ -0.65
NEDD9-201ENST00000379433 TRPM7Q96QT4 1865 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 SLC12A8A0AV02 714 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 ENPP3O14638 875 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 KRT37O76014 449 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 CNTN5O94779 1100 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 CCR1P32246 355 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 SLC11A1P49279 550 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 ZBTB16Q05516 673 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 TRIM71Q2Q1W2 868 aaKnown RBP11□□□□□ -0.65
NEDD9-201ENST00000379433 ADGRD1Q6QNK2 874 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 RNF19BQ6ZMZ0 732 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11□□□□□ -0.65
NEDD9-201ENST00000379433 BZW1Q7L1Q6 419 aaKnown RBP11□□□□□ -0.65
NEDD9-201ENST00000379433 SCD5Q86SK9 330 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 C11orf74Q86VG3 221 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 SLC26A11Q86WA9 606 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 ATP2A3Q93084 1043 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 TMEM237Q96Q45 408 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 SHCBP1LQ9BZQ2 653 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 SDR42E2A6NKP2 422 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 CCT8L1PA6NM43 557 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 ARVCFO00192 962 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 GCATO75600 419 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 ASMTLO95671 621 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 SELPP16109 830 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 TMPRSS15P98073 1019 aa11□□□□□ -0.65
NEDD9-201ENST00000379433 TNFAIP8L3Q5GJ75 292 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms