RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 KPNA6O60684 536 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 HARS2P49590 506 aaKnown RBP13.62□□□□□ -0.23
CCDC3-202ENST00000378839 ABCE1P61221 599 aaKnown RBP13.62□□□□□ -0.23
CCDC3-202ENST00000378839 PEX6Q13608 980 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 FRG1Q14331 258 aaKnown RBP13.62□□□□□ -0.23
CCDC3-202ENST00000378839 ZNF460Q14592 562 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 PPP2R5DQ14738 602 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 NOMO2Q5JPE7 1267 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 KDELC2Q7Z4H8 507 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 DENND6AQ8IWF6 608 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 POU5F2Q8N7G0 328 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 ZNF781Q8N8C0 355 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 URGCPQ8TCY9 931 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 VPS39Q96JC1 886 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 FCRL2Q96LA5 508 aaPredicted RBP13.62□□□□□ -0.23
CCDC3-202ENST00000378839 TSGA13Q96PP4 275 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 TUBB6Q9BUF5 446 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 FTHL17Q9BXU8 183 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 CPSF2Q9P2I0 782 aaKnown RBP13.62□□□□□ -0.23
CCDC3-202ENST00000378839 TXNDC16Q9P2K2 825 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 TAGLN3Q9UI15 199 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 PGM1P36871 562 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 CHRNA4P43681 627 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 TUSC3Q13454 348 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 KIFC1Q9BW19 673 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 BRD8Q9H0E9 1235 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 ATXN3LQ9H3M9 355 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 NOL6Q9H6R4 1146 aaKnown RBP13.61□□□□□ -0.23
CCDC3-202ENST00000378839 ZFYVE28Q9HCC9 887 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 LRRC42Q9Y546 428 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 A0A1W2PQH9 124 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 PHGDHO43175 533 aaKnown RBP13.61□□□□□ -0.23
CCDC3-202ENST00000378839 SIN3BO75182 1162 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 TBX10O75333 385 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 AHSGP02765 367 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 HLA-DQB2P05538 268 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 SLC10A3P09131 477 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 HOXC13P31276 330 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 SPRP35270 261 aaPredicted RBP13.61□□□□□ -0.23
CCDC3-202ENST00000378839 SERPINB8P50452 374 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 PRKCZQ05513 592 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 MPP3Q13368 585 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 POU6F1Q14863 301 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 RCN1Q15293 331 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 ZC3HC1Q86WB0 502 aaKnown RBP13.61□□□□□ -0.23
CCDC3-202ENST00000378839 SCML4Q8N228 414 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 SHCBP1LQ9BZQ2 653 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 YIPF3Q9GZM5 350 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 GPBP1L1Q9HC44 474 aaPredicted RBP13.61□□□□□ -0.23
CCDC3-202ENST00000378839 MAN1C1Q9NR34 630 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 WASF2Q9Y6W5 498 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 CHRNGP07510 517 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 ALOX15P16050 662 aaPredicted RBP13.61□□□□□ -0.23
CCDC3-202ENST00000378839 AVPR1AP37288 418 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 NPY2RP49146 381 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 SESN3P58005 492 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 MPP1Q00013 466 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 MBTPS1Q14703 1052 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 DBN1Q16643 649 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 ESRP1Q6NXG1 681 aaKnown RBP13.61□□□□□ -0.23
CCDC3-202ENST00000378839 PHTF2Q8N3S3 785 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 SPATA6LQ8N4H0 392 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 TTC9BQ8N6N2 239 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 KLHDC9Q8NEP7 349 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 IPMKQ8NFU5 416 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 AGR3Q8TD06 166 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 DTX3LQ8TDB6 740 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 SUSD3Q96L08 255 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 PANX3Q96QZ0 392 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 UNKQ9C0B0 810 aaKnown RBP13.61□□□□□ -0.23
CCDC3-202ENST00000378839 IL22Q9GZX6 179 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 ADAM28Q9UKQ2 775 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 SLC39A10Q9ULF5 831 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 HS3ST4Q9Y661 456 aa13.61□□□□□ -0.23
CCDC3-202ENST00000378839 FNDC1Q4ZHG4 1894 aaPredicted RBP13.6□□□□□ -0.23
CCDC3-202ENST00000378839 ERI2A8K979 691 aaKnown RBP13.6□□□□□ -0.23
CCDC3-202ENST00000378839 KCNU1A8MYU2 1149 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 TK2O00142 265 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 SEPT4O43236 478 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 MOCS2O96007 188 aaPredicted RBP13.6□□□□□ -0.23
CCDC3-202ENST00000378839 SERPINB6P35237 376 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 ADRA1AP35348 466 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 ARCN1P48444 511 aaKnown RBP13.6□□□□□ -0.23
CCDC3-202ENST00000378839 RAP1GDS1P52306 607 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 USP46P62068 366 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 NKX3-2P78367 333 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 SLC25A3Q00325 362 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 GRIK3Q13003 919 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 CTBP1Q13363 440 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 THOC5Q13769 683 aaKnown RBP13.6□□□□□ -0.23
CCDC3-202ENST00000378839 FAM219BQ5XKK7 198 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 ITPRIPL1Q6GPH6 555 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 METTL23Q86XA0 190 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 CEP97Q8IW35 865 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 GPR152Q8TDT2 470 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 SH3TC2Q8TF17 1288 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 LINC01599Q8WXQ3 324 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 MCUR1Q96AQ8 359 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 IL12RB2Q99665 862 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 RPL26L1Q9UNX3 145 aaKnown RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms