RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 SPASTQ9UBP0 616 aa13.4□□□□□ -0.26
NPHP4-203ENST00000378169 MZF1P28698 734 aaPredicted RBP13.39□□□□□ -0.27
NPHP4-203ENST00000378169 GRK4P32298 578 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 CDK7P50613 346 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 USP4Q13107 963 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 XRCC4Q13426 336 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 TRMT5Q32P41 509 aaKnown RBP13.39□□□□□ -0.27
NPHP4-203ENST00000378169 HECTD3Q5T447 861 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 NUDT18Q6ZVK8 323 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 EFL1Q7Z2Z2 1120 aaKnown RBP13.39□□□□□ -0.27
NPHP4-203ENST00000378169 ZNF572Q7Z3I7 529 aaPredicted RBP13.39□□□□□ -0.27
NPHP4-203ENST00000378169 EFCAB3Q8N7B9 438 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 DIS3LQ8TF46 1054 aaKnown RBP13.39□□□□□ -0.27
NPHP4-203ENST00000378169 SLC44A1Q8WWI5 657 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 CXorf56Q9H5V9 222 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 CAAP1Q9H8G2 361 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 BPIFA1Q9NP55 256 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 BATF3Q9NR55 127 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 KCNK4Q9NYG8 393 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 A0A1W2PQH9 124 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 ARL5CA6NH57 179 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 LZTS3O60299 673 aaPredicted RBP13.39□□□□□ -0.27
NPHP4-203ENST00000378169 HDCP19113 662 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 CDC25CP30307 473 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 BOP1Q14137 746 aaKnown RBP13.39□□□□□ -0.27
NPHP4-203ENST00000378169 TEX44Q53QW1 395 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 ANKS6Q68DC2 871 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 MON1AQ86VX9 555 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 OR52K2Q8NGK3 314 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 SPATA22Q8NHS9 363 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 AGAP11Q8TF27 550 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 CNBD2Q96M20 576 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 CDRT15Q96T59 188 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 COG4Q9H9E3 785 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 XPR1Q9UBH6 696 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 CCNT2O60583 730 aaKnown RBP13.39□□□□□ -0.27
NPHP4-203ENST00000378169 SLC5A3P53794 718 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 TMED1Q13445 227 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 SCARA3Q6AZY7 606 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 ISLR2Q6UXK2 745 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 DNAJC14Q6Y2X3 702 aaPredicted RBP13.39□□□□□ -0.27
NPHP4-203ENST00000378169 ALYREFQ86V81 257 aaKnown RBP13.39□□□□□ -0.27
NPHP4-203ENST00000378169 MIER2Q8N344 545 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 HDAC10Q969S8 669 aa13.39□□□□□ -0.27
NPHP4-203ENST00000378169 MYH11P35749 1972 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 CYP1B1Q16678 543 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 PPM1JQ5JR12 505 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 TRMT10BQ6PF06 316 aaKnown RBP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 CYP2R1Q6VVX0 501 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 SLC22A9Q8IVM8 553 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 ZC3H3Q8IXZ2 948 aaKnown RBP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 PGBD3Q8N328 593 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 FAM162AQ96A26 154 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 PLK2Q9NYY3 685 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 PLA2G4CQ9UP65 541 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 MYH8P13535 1937 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 SRRM3A6NNA2 597 aaPredicted RBP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 C2P06681 752 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 TFEBP19484 476 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 EPHA3P29320 983 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 MRPS35P82673 323 aaKnown RBP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 SMAD3P84022 425 aaKnown RBP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 DSG1Q02413 1049 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 IKBKEQ14164 716 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 C10orf107Q8IVU9 208 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 NPLOC4Q8TAT6 608 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 VPS50Q96JG6 964 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 DEFB118Q96PH6 123 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 TRMT13Q9NUP7 481 aaKnown RBP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 TMEM59LQ9UK28 342 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 LOC102724159A0A0B4J2E5 919 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 HNRNPLP14866 589 aaKnown RBP eCLIP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 ABL2P42684 1182 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 PWP2Q15269 919 aaKnown RBP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 TARBP2Q15633 366 aaKnown RBP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 SYPL2Q5VXT5 272 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 PCDH20Q8N6Y1 951 aaKnown RBP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 METTL6Q8TCB7 284 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 MCRS1Q96EZ8 462 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 OLFM3Q96PB7 478 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 HNRNPABQ99729 332 aaKnown RBP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 SEMA4BQ9NPR2 832 aaPredicted RBP13.38□□□□□ -0.27
NPHP4-203ENST00000378169 DTLQ9NZJ0 730 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 SIX4Q9UIU6 781 aa13.38□□□□□ -0.27
NPHP4-203ENST00000378169 EVPLLA8MZ36 301 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 SH3BGRLO75368 114 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 MT-CYBP00156 380 aaPredicted RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 SPATA31D3P0C874 917 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 PTPN9P43378 593 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 GRIA4P48058 902 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 RPL14P50914 215 aaKnown RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 CDH13P55290 713 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 UBAP2LQ14157 1087 aaKnown RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 FASTKQ14296 549 aaKnown RBP13.37□□□□□ -0.27
NPHP4-203ENST00000378169 GALNT3Q14435 633 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 C1orf220Q5T0J3 134 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 TMEM63BQ5T3F8 832 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 IYDQ6PHW0 289 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 SPATA31D4Q6ZUB0 917 aa13.37□□□□□ -0.27
NPHP4-203ENST00000378169 C11orf96Q7Z7L8 435 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms