RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SRCP12931 536 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 TFDP2Q14188 446 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 HSF5Q4G112 596 aaPredicted RBP22.62■■□□□ 1.21
SHMT1-203ENST00000354098 SDE2Q6IQ49 451 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 RETSATQ6NUM9 610 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 SH2D3CQ8N5H7 860 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 ATP11CQ8NB49 1132 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 UBE2Q2Q8WVN8 375 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 LRFN3Q9BTN0 628 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 SPATA6Q9NWH7 488 aaPredicted RBP22.62■■□□□ 1.21
SHMT1-203ENST00000354098 JRKLQ9Y4A0 524 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 NYNRINQ9P2P1 1898 aaKnown RBP22.62■■□□□ 1.21
SHMT1-203ENST00000354098 KCNK3O14649 394 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 VAV1P15498 845 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 COL9A1P20849 921 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 PTPN7P35236 360 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 SATB1Q01826 763 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 KIAA1211LQ6NV74 962 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 SYT13Q7L8C5 426 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 PRDM16Q9HAZ2 1276 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 PDFQ9HBH1 243 aa22.62■■□□□ 1.21
SHMT1-203ENST00000354098 IPO11Q9UI26 975 aaKnown RBP22.62■■□□□ 1.21
SHMT1-203ENST00000354098 A0A1W2PQF6 199 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 PRAMEF11O60813 436 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 EPHX1P07099 455 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 HOXB2P14652 356 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 PECAM1P16284 738 aaPredicted RBP22.61■■□□□ 1.21
SHMT1-203ENST00000354098 ZFXP17010 805 aaPredicted RBP22.61■■□□□ 1.21
SHMT1-203ENST00000354098 SERPINH1P50454 418 aaKnown RBP22.61■■□□□ 1.21
SHMT1-203ENST00000354098 GNG11P61952 73 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 GALNT2Q10471 571 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 DLG2Q15700 870 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 CRY1Q16526 586 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 ACCSLQ4AC99 568 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 EOGTQ5NDL2 527 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 KDM1BQ8NB78 822 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 DTWD2Q8NBA8 298 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 FRS2Q8WU20 508 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 HAUS1Q96CS2 278 aa22.61■■□□□ 1.21
SHMT1-203ENST00000354098 FCF1Q9Y324 198 aaKnown RBP22.61■■□□□ 1.21
SHMT1-203ENST00000354098 ATP9BO43861 1147 aa22.6■■□□□ 1.21
SHMT1-203ENST00000354098 MAFKO60675 156 aa22.6■■□□□ 1.21
SHMT1-203ENST00000354098 ATP1A1P05023 1023 aaKnown RBP22.6■■□□□ 1.21
SHMT1-203ENST00000354098 CXCR5P32302 372 aa22.6■■□□□ 1.21
SHMT1-203ENST00000354098 NNMTP40261 264 aa22.6■■□□□ 1.21
SHMT1-203ENST00000354098 E2F5Q15329 346 aa22.6■■□□□ 1.21
SHMT1-203ENST00000354098 BBS12Q6ZW61 710 aa22.6■■□□□ 1.21
SHMT1-203ENST00000354098 WDR24Q96S15 920 aa22.6■■□□□ 1.21
SHMT1-203ENST00000354098 IER2Q9BTL4 223 aa22.6■■□□□ 1.21
SHMT1-203ENST00000354098 CD248Q9HCU0 757 aa22.6■■□□□ 1.21
SHMT1-203ENST00000354098 EFR3BQ9Y2G0 817 aa22.6■■□□□ 1.21
SHMT1-203ENST00000354098 ZKSCAN5Q9Y2L8 839 aa22.6■■□□□ 1.21
SHMT1-203ENST00000354098 CETN2P41208 172 aa22.59■■□□□ 1.21
SHMT1-203ENST00000354098 GARSP41250 739 aaKnown RBP22.59■■□□□ 1.21
SHMT1-203ENST00000354098 CXCL12P48061 93 aa22.59■■□□□ 1.21
SHMT1-203ENST00000354098 VASPP50552 380 aaPredicted RBP22.59■■□□□ 1.21
SHMT1-203ENST00000354098 SLC20A2Q08357 652 aa22.59■■□□□ 1.21
SHMT1-203ENST00000354098 MAMSTRQ6ZN01 415 aa22.59■■□□□ 1.21
SHMT1-203ENST00000354098 ATPAF2Q8N5M1 289 aa22.59■■□□□ 1.21
SHMT1-203ENST00000354098 PTPRN2Q92932 1015 aa22.59■■□□□ 1.21
SHMT1-203ENST00000354098 SP110Q9HB58 689 aa22.59■■□□□ 1.21
SHMT1-203ENST00000354098 ZNF821O75541 412 aaPredicted RBP22.58■■□□□ 1.21
SHMT1-203ENST00000354098 TGM2P21980 687 aa22.58■■□□□ 1.21
SHMT1-203ENST00000354098 IL10RBQ08334 325 aa22.58■■□□□ 1.21
SHMT1-203ENST00000354098 HNRNPA1L2Q32P51 320 aaKnown RBP22.58■■□□□ 1.21
SHMT1-203ENST00000354098 B4GALNT4Q76KP1 1039 aa22.58■■□□□ 1.21
SHMT1-203ENST00000354098 C1orf210Q8IVY1 113 aa22.58■■□□□ 1.21
SHMT1-203ENST00000354098 LGMNQ99538 433 aa22.58■■□□□ 1.21
SHMT1-203ENST00000354098 CARD9Q9H257 536 aa22.58■■□□□ 1.21
SHMT1-203ENST00000354098 PRSS16Q9NQE7 514 aa22.58■■□□□ 1.21
SHMT1-203ENST00000354098 TCRBV7S2A1N4TA0A589 114 aa22.58■■□□□ 1.2
SHMT1-203ENST00000354098 ZSCAN5CA6NGD5 496 aaPredicted RBP22.58■■□□□ 1.2
SHMT1-203ENST00000354098 MSNP26038 577 aaKnown RBP22.58■■□□□ 1.2
SHMT1-203ENST00000354098 Q6ZVU0 165 aa22.58■■□□□ 1.2
SHMT1-203ENST00000354098 MAML2Q8IZL2 1156 aaPredicted RBP22.58■■□□□ 1.2
SHMT1-203ENST00000354098 OLFM3Q96PB7 478 aa22.58■■□□□ 1.2
SHMT1-203ENST00000354098 HHIPQ96QV1 700 aa22.58■■□□□ 1.2
SHMT1-203ENST00000354098 TNKS2Q9H2K2 1166 aa22.58■■□□□ 1.2
SHMT1-203ENST00000354098 UBA2Q9UBT2 640 aaPredicted RBP22.58■■□□□ 1.2
SHMT1-203ENST00000354098 SLC8A2Q9UPR5 921 aa22.58■■□□□ 1.2
SHMT1-203ENST00000354098 CXorf51AA0A1B0GTR3 108 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 SYNCRIPO60506 623 aaKnown RBP22.57■■□□□ 1.2
SHMT1-203ENST00000354098 SIN3BO75182 1162 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 TMCC1O94876 653 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 TJP3O95049 919 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 PEX11BO96011 259 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 CCR3P51677 355 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 GEMIN4P57678 1058 aaKnown RBP22.57■■□□□ 1.2
SHMT1-203ENST00000354098 CYTH1Q15438 398 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 C9orf64Q5T6V5 341 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 SEL1L2Q5TEA6 688 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 C22orf39Q6P5X5 142 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 TSSK4Q6SA08 328 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 CCNYQ8ND76 341 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 P3H4Q92791 437 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 SUN2Q9UH99 717 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 KMT2EQ8IZD2 1858 aa22.57■■□□□ 1.2
SHMT1-203ENST00000354098 APOC4-APOC2K7ER74 178 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 FANCGO15287 622 aa22.56■■□□□ 1.2
SHMT1-203ENST00000354098 BNIP3LO60238 219 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms