RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 DSEQ9UL01 958 aa22.17■■□□□ 1.14
SHMT1-202ENST00000352886 AAR2Q9Y312 384 aaKnown RBP22.17■■□□□ 1.14
SHMT1-202ENST00000352886 BPTFQ12830 3046 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 M0QZQ0 153 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 CACNG3O60359 315 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 HSPA4LO95757 839 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 ITGB1P05556 798 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 ATP6V1C1P21283 382 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 CCNCP24863 283 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 CPOXP36551 454 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 USP4Q13107 963 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 TSNAXIP1Q2TAA8 658 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 RAPH1Q70E73 1250 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 NET1Q7Z628 596 aaPredicted RBP22.16■■□□□ 1.14
SHMT1-202ENST00000352886 IFNL1Q8IU54 200 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 POU5F2Q8N7G0 328 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 ZNF781Q8N8C0 355 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 RSPH1Q8WYR4 309 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 FAM167BQ9BTA0 163 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 CPSF2Q9P2I0 782 aaKnown RBP22.16■■□□□ 1.14
SHMT1-202ENST00000352886 SFMBT1Q9UHJ3 866 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 MRPL42Q9Y6G3 142 aaKnown RBP22.16■■□□□ 1.14
SHMT1-202ENST00000352886 A0A0U1RQF3 1178 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 NVLO15381 856 aaKnown RBP22.16■■□□□ 1.14
SHMT1-202ENST00000352886 PSMD3O43242 534 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 MSI1O43347 362 aaKnown RBP22.16■■□□□ 1.14
SHMT1-202ENST00000352886 PAGE1O75459 146 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 CIB2O75838 187 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 CYBAP13498 195 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 SAT1P21673 171 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 GCKP35557 465 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 RAB27AP51159 221 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 PDPK2PQ6A1A2 396 aa22.16■■□□□ 1.14
SHMT1-202ENST00000352886 MYLKQ15746 1914 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 F8W810 466 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 F8W8V4 182 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 ABL2P42684 1182 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 PGFP49763 221 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 SLC5A3P53794 718 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 GRIK3Q13003 919 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 TUSC3Q13454 348 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 ANO4Q32M45 955 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 BTBD8Q5XKL5 378 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 RIPOR1Q6ZS17 1223 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 IPMKQ8NFU5 416 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 PANX3Q96QZ0 392 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 TBL1YQ9BQ87 522 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 ABCC13Q9NSE7 274 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 CDY1Q9Y6F8 540 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 PALM2-AKAP2B1ALY0 433 aaPredicted RBP22.15■■□□□ 1.14
SHMT1-202ENST00000352886 MYL4P12829 197 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 DNAJB2P25686 324 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 POU6F1Q14863 301 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 TRMT5Q32P41 509 aaKnown RBP22.15■■□□□ 1.14
SHMT1-202ENST00000352886 C6orf163Q5TEZ5 329 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 LRRC74BQ6ZQY2 392 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 BEND5Q7L4P6 421 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 ZC3HC1Q86WB0 502 aaKnown RBP22.15■■□□□ 1.14
SHMT1-202ENST00000352886 KLHDC8BQ8IXV7 354 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 THEM5Q8N1Q8 247 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 ZNF333Q96JL9 665 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 HAPLN3Q96S86 360 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 GPR22Q99680 433 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 ADAM2Q99965 735 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 SPC25Q9HBM1 224 aa22.15■■□□□ 1.14
SHMT1-202ENST00000352886 FNDC1Q4ZHG4 1894 aaPredicted RBP22.14■■□□□ 1.14
SHMT1-202ENST00000352886 NYNRINQ9P2P1 1898 aaKnown RBP22.14■■□□□ 1.14
SHMT1-202ENST00000352886 MYO16Q9Y6X6 1858 aa22.14■■□□□ 1.14
SHMT1-202ENST00000352886 MAFKO60675 156 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 TRIM13O60858 407 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 NCF2P19878 526 aaPredicted RBP22.14■■□□□ 1.13
SHMT1-202ENST00000352886 ERFP50548 548 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 PGGT1BP53609 377 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 SLC25A3Q00325 362 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 TSPY1Q01534 308 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 MAPRE1Q15691 268 aaKnown RBP22.14■■□□□ 1.13
SHMT1-202ENST00000352886 BRMS1LQ5PSV4 323 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 SREK1Q8WXA9 508 aaKnown RBP22.14■■□□□ 1.13
SHMT1-202ENST00000352886 CASP10Q92851 521 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 MIEF2Q96C03 454 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 SLC39A8Q9C0K1 460 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 CDH19Q9H159 772 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 COG4Q9H9E3 785 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 NDFIP2Q9NV92 336 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 NSMCE4AQ9NXX6 385 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 NUDT5Q9UKK9 219 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 WASF2Q9Y6W5 498 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 ACADSP16219 412 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 CCR1P32246 355 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 GRIK1P39086 918 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 COPAP53621 1224 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 CMPK2Q5EBM0 449 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 CFAP157Q5JU67 520 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 AGR3Q8TD06 166 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 FCRL2Q96LA5 508 aaPredicted RBP22.14■■□□□ 1.13
SHMT1-202ENST00000352886 FCRL5Q96RD9 977 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 RHOJQ9H4E5 214 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 TASP1Q9H6P5 420 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 CATSPERBQ9H7T0 1116 aa22.14■■□□□ 1.13
SHMT1-202ENST00000352886 TLK1Q9UKI8 766 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms